PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox6 | dr11_v1_chr7_+_27250012_27250012 | -0.39 | 1.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22339582 Show fit | 5.26 |
ENSDART00000134805
|
crystallin, gamma M2d1 |
|
chr9_-_22318511 Show fit | 5.09 |
ENSDART00000129295
|
crystallin, gamma M2d2 |
|
chr9_-_22272181 Show fit | 4.83 |
ENSDART00000113174
|
crystallin, gamma M2d7 |
|
chr5_-_30615901 Show fit | 3.79 |
ENSDART00000147769
|
si:ch211-117m20.5 |
|
chr1_-_55810730 Show fit | 3.68 |
ENSDART00000100551
|
zgc:136908 |
|
chr10_+_44042033 Show fit | 3.56 |
ENSDART00000190006
ENSDART00000046172 |
crystallin, beta A4 |
|
chr7_+_39444843 Show fit | 3.38 |
ENSDART00000143999
ENSDART00000173554 ENSDART00000173698 ENSDART00000173754 ENSDART00000144075 ENSDART00000138192 ENSDART00000145457 ENSDART00000141750 ENSDART00000103056 ENSDART00000142946 ENSDART00000173748 |
troponin T type 3b (skeletal, fast) |
|
chr23_+_27068225 Show fit | 2.95 |
ENSDART00000054238
|
major intrinsic protein of lens fiber a |
|
chr12_-_22524388 Show fit | 2.31 |
ENSDART00000020942
|
sex hormone-binding globulin |
|
chr2_+_3472832 Show fit | 2.31 |
ENSDART00000115278
|
connexin 47.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 18.4 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 4.6 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
1.2 | 3.7 | GO:0051228 | mitotic spindle disassembly(GO:0051228) spindle disassembly(GO:0051230) |
0.1 | 3.4 | GO:0006942 | regulation of striated muscle contraction(GO:0006942) |
0.5 | 2.9 | GO:0003151 | outflow tract morphogenesis(GO:0003151) |
0.3 | 2.9 | GO:0006833 | water transport(GO:0006833) |
0.1 | 2.0 | GO:0033555 | multicellular organismal response to stress(GO:0033555) |
0.0 | 1.6 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
0.1 | 1.4 | GO:0050909 | sensory perception of taste(GO:0050909) |
0.1 | 1.3 | GO:0009251 | polysaccharide catabolic process(GO:0000272) glycogen catabolic process(GO:0005980) glucan catabolic process(GO:0009251) cellular polysaccharide catabolic process(GO:0044247) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 3.7 | GO:0034098 | VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098) |
0.1 | 3.7 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.4 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.0 | 0.9 | GO:0016282 | eukaryotic 43S preinitiation complex(GO:0016282) |
0.1 | 0.8 | GO:0016012 | sarcoglycan complex(GO:0016012) |
0.0 | 0.8 | GO:0097610 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.0 | 0.7 | GO:0000421 | autophagosome membrane(GO:0000421) |
0.1 | 0.6 | GO:0044295 | axonal growth cone(GO:0044295) |
0.0 | 0.6 | GO:0031941 | filamentous actin(GO:0031941) |
0.0 | 0.5 | GO:0030057 | desmosome(GO:0030057) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 18.8 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.3 | 3.7 | GO:0031013 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
0.1 | 3.7 | GO:0031593 | polyubiquitin binding(GO:0031593) |
0.3 | 2.9 | GO:0015250 | water channel activity(GO:0015250) |
0.0 | 2.3 | GO:0042562 | hormone binding(GO:0042562) |
0.0 | 2.0 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.0 | 2.0 | GO:0004521 | endoribonuclease activity(GO:0004521) |
0.1 | 1.9 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.1 | 1.4 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.3 | 1.3 | GO:0004133 | glycogen debranching enzyme activity(GO:0004133) 4-alpha-glucanotransferase activity(GO:0004134) amylo-alpha-1,6-glucosidase activity(GO:0004135) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
0.0 | 0.9 | ST PHOSPHOINOSITIDE 3 KINASE PATHWAY | PI3K Pathway |
0.0 | 0.8 | ST G ALPHA I PATHWAY | G alpha i Pathway |
0.0 | 0.5 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
0.0 | 0.4 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.1 | 1.1 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.1 | 0.9 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.1 | 0.9 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.1 | 0.9 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.0 | 0.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.0 | 0.8 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.0 | 0.6 | REACTOME KERATAN SULFATE BIOSYNTHESIS | Genes involved in Keratan sulfate biosynthesis |
0.2 | 0.5 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
0.1 | 0.5 | REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Glutamate Neurotransmitter Release Cycle |