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PRJEB1986: zebrafish developmental stages transcriptome

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Results for sox7

Z-value: 0.57

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Transcription factors associated with sox7

Gene Symbol Gene ID Gene Info
sox7
ENSDARG00000030125 SRY-box transcription factor 7

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
sox7dr11_v1_chr20_+_19066858_190668580.233.5e-01Click!

Activity profile of sox7 motif

Sorted Z-values of sox7 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr23_-_26535875 0.80 ENSDART00000135988
si:dkey-205h13.2
si:dkey-205h13.2
chr2_-_24996441 0.78 ENSDART00000144795
slc35g2a
solute carrier family 35, member G2a
chr23_-_26536055 0.64 ENSDART00000182719
si:dkey-205h13.2
si:dkey-205h13.2
chr9_-_23033818 0.56 ENSDART00000022392
rnd3b
Rho family GTPase 3b
chr11_+_10541258 0.55 ENSDART00000132365
b3gnt5a
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5a
chr5_+_34982318 0.53 ENSDART00000160504
ankra2
ankyrin repeat, family A (RFXANK-like), 2
chr8_+_23174137 0.53 ENSDART00000189470
dnajc5aa
DnaJ (Hsp40) homolog, subfamily C, member 5aa
chr25_-_22639133 0.52 ENSDART00000073583
islr2
immunoglobulin superfamily containing leucine-rich repeat 2
chr20_+_50956369 0.49 ENSDART00000170854
gphnb
gephyrin b
chr15_-_21692630 0.49 ENSDART00000039865
sdhdb
succinate dehydrogenase complex, subunit D, integral membrane protein b
chr21_-_18932761 0.48 ENSDART00000140129
med15
mediator complex subunit 15
chr12_-_4540564 0.47 ENSDART00000106566
CABZ01030107.1

chr8_+_16726386 0.45 ENSDART00000144621
smim15
small integral membrane protein 15
chr8_-_22514918 0.45 ENSDART00000021514
ENSDART00000189272
apex2
APEX nuclease (apurinic/apyrimidinic endonuclease) 2
chr25_-_7999756 0.44 ENSDART00000159908
camk1db
calcium/calmodulin-dependent protein kinase 1Db
chr2_+_6991208 0.44 ENSDART00000182239
ddr2b
discoidin domain receptor tyrosine kinase 2b
chr21_+_4320769 0.40 ENSDART00000168553
HTRA2 (1 of many)
si:dkey-84o3.4
chr16_+_27345383 0.39 ENSDART00000078250
ENSDART00000162857
nr4a3
nuclear receptor subfamily 4, group A, member 3
chr15_-_23647078 0.38 ENSDART00000059366
ckmb
creatine kinase, muscle b
chr22_-_29191152 0.38 ENSDART00000132702
pvalb7
parvalbumin 7
chr7_-_61288882 0.38 ENSDART00000098616
ENSDART00000137762
rwdd
RWD domain containing 4
chr11_+_3308656 0.36 ENSDART00000082458
sarnp
SAP domain containing ribonucleoprotein
chr19_-_42462491 0.35 ENSDART00000131715
psmb4
proteasome subunit beta 4
chr7_-_13648635 0.35 ENSDART00000148957
ENSDART00000130967
spg21
spastic paraplegia 21 (autosomal recessive, Mast syndrome)
chr16_-_31933740 0.33 ENSDART00000125411
si:ch1073-90m23.1
si:ch1073-90m23.1
chr16_+_40024883 0.33 ENSDART00000110100
hint3
histidine triad nucleotide binding protein 3
chr22_-_26558166 0.30 ENSDART00000111125
glis2a
GLIS family zinc finger 2a
chr10_-_23379146 0.30 ENSDART00000056369
cadm2a
cell adhesion molecule 2a
chr20_+_38276690 0.29 ENSDART00000061437
ccl38.6
chemokine (C-C motif) ligand 38, duplicate 6
chr17_+_15534815 0.29 ENSDART00000159426
marcksb
myristoylated alanine-rich protein kinase C substrate b
chr21_-_21570134 0.27 ENSDART00000174388
or133-4
odorant receptor, family H, subfamily 133, member 4
chr21_+_19062124 0.26 ENSDART00000134746
rpl17
ribosomal protein L17
chr13_-_30161684 0.26 ENSDART00000040409
ppa1b
pyrophosphatase (inorganic) 1b
chr5_-_57169604 0.26 ENSDART00000136232
si:dkey-79c1.1
si:dkey-79c1.1
chr16_+_46111849 0.25 ENSDART00000172232
sv2a
synaptic vesicle glycoprotein 2A
chr15_-_35252522 0.24 ENSDART00000144153
ENSDART00000059195
mff
mitochondrial fission factor
chr1_-_10669436 0.23 ENSDART00000152421
si:dkey-31e10.5
si:dkey-31e10.5
chr21_-_41147818 0.23 ENSDART00000167339
ENSDART00000192730
msx2b
muscle segment homeobox 2b
chr8_+_35664152 0.22 ENSDART00000144520
si:dkeyp-14d3.1
si:dkeyp-14d3.1
chr21_-_19330333 0.22 ENSDART00000101462
mrps18c
mitochondrial ribosomal protein S18C
chr13_+_835390 0.20 ENSDART00000171329
gsta.1
glutathione S-transferase, alpha tandem duplicate 1
chr14_+_45645024 0.19 ENSDART00000168278
si:ch211-276i12.4
si:ch211-276i12.4
chr25_+_28253844 0.19 ENSDART00000151891
cadps2
Ca++-dependent secretion activator 2
chr6_-_16735402 0.19 ENSDART00000154216
pimr44
Pim proto-oncogene, serine/threonine kinase, related 44
chr22_-_26852516 0.18 ENSDART00000005829
gde1
glycerophosphodiester phosphodiesterase 1
chr19_-_11031145 0.18 ENSDART00000151375
ENSDART00000027598
ENSDART00000137865
ENSDART00000188025
tpm3
tropomyosin 3
chr9_-_9989660 0.18 ENSDART00000081463
ugt1ab
UDP glucuronosyltransferase 1 family a, b
chr6_+_49081141 0.17 ENSDART00000131080
ENSDART00000050000
tshba
thyroid stimulating hormone, beta subunit, a
chr1_+_36674584 0.16 ENSDART00000186772
ENSDART00000192274
ednraa
endothelin receptor type Aa
chr10_+_22034477 0.16 ENSDART00000133304
ENSDART00000134189
ENSDART00000021240
ENSDART00000100526
npm1a
nucleophosmin 1a
chr8_-_46457233 0.16 ENSDART00000113214
sult1st7
sulfotransferase family 1, cytosolic sulfotransferase 7
chr5_+_13891202 0.16 ENSDART00000193992
hk2
hexokinase 2
chr6_-_17266221 0.16 ENSDART00000155448
pimr18
Pim proto-oncogene, serine/threonine kinase, related 18
chr6_-_16804001 0.16 ENSDART00000155398
pimr40
Pim proto-oncogene, serine/threonine kinase, related 40
chr6_-_17052116 0.15 ENSDART00000156825
pimr45
Pim proto-oncogene, serine/threonine kinase, related 45
chr1_+_12335816 0.15 ENSDART00000067086
nansa
N-acetylneuraminic acid synthase a
chr13_+_43650632 0.14 ENSDART00000141024
zfyve21
zinc finger, FYVE domain containing 21
chr6_-_17179637 0.14 ENSDART00000153710
pimr19
Pim proto-oncogene, serine/threonine kinase, related 19
chr11_-_3308569 0.14 ENSDART00000036581
cdk2
cyclin-dependent kinase 2
chr5_-_37103487 0.14 ENSDART00000149211
il13ra2
interleukin 13 receptor, alpha 2
chr22_-_29204960 0.14 ENSDART00000131386
pvalb7
parvalbumin 7
chr6_-_16868834 0.13 ENSDART00000156503
pimr41
Pim proto-oncogene, serine/threonine kinase, related 41
chr21_+_20903244 0.13 ENSDART00000186193
c7b
complement component 7b
chr9_+_11587629 0.13 ENSDART00000102508
ENSDART00000146585
si:dkey-69o16.5
si:dkey-69o16.5
chr6_-_16948040 0.13 ENSDART00000156433
pimr30
Pim proto-oncogene, serine/threonine kinase, related 30
chr7_-_17412559 0.12 ENSDART00000163020
nitr3a
novel immune-type receptor 3a
chr13_+_24829996 0.12 ENSDART00000147194
si:ch211-223p8.8
si:ch211-223p8.8
chr7_-_35083184 0.12 ENSDART00000100253
ENSDART00000135250
ENSDART00000173511
agrp
agouti related neuropeptide
chr21_-_43171249 0.12 ENSDART00000021037
ENSDART00000148630
hspa4a
heat shock protein 4a
chr2_-_51511494 0.11 ENSDART00000161392
ENSDART00000160877
si:ch211-9d9.8
si:ch211-9d9.8
chr17_-_46817295 0.10 ENSDART00000155904
pimr24
Pim proto-oncogene, serine/threonine kinase, related 24
chr3_-_27065477 0.10 ENSDART00000185660
atf7ip2
activating transcription factor 7 interacting protein 2
chr17_-_46933567 0.10 ENSDART00000157274
pimr25
Pim proto-oncogene, serine/threonine kinase, related 25
chr2_-_51611344 0.10 ENSDART00000158137
si:ch211-9d9.8
si:ch211-9d9.8
chr20_+_37294112 0.09 ENSDART00000076293
ENSDART00000140450
cx23
connexin 23
chr22_+_2239254 0.08 ENSDART00000131396
ENSDART00000135320
znf1144
zinc finger protein 1144
chr10_+_27068251 0.08 ENSDART00000012717
ehd1b
EH-domain containing 1b
chr10_+_29770120 0.08 ENSDART00000100032
ENSDART00000193205
hyou1
hypoxia up-regulated 1
chr16_-_31985965 0.07 ENSDART00000161944
si:dkey-40m6.14
si:dkey-40m6.14
chr24_-_20652473 0.07 ENSDART00000179984
nktr
natural killer cell triggering receptor
chr18_-_18524624 0.07 ENSDART00000157834
lonp2
lon peptidase 2, peroxisomal
chr3_+_52737565 0.06 ENSDART00000108639
gmip
GEM interacting protein
chr4_+_47178124 0.06 ENSDART00000170816
si:dkey-26m3.2
si:dkey-26m3.2
chr18_+_14684115 0.06 ENSDART00000108469
spata2l
spermatogenesis associated 2-like
chr14_-_30490465 0.06 ENSDART00000173107
micu3b
mitochondrial calcium uptake family, member 3b
chr8_-_48741106 0.06 ENSDART00000164203
pimr180
Pim proto-oncogene, serine/threonine kinase, related 180
chr14_+_8725216 0.06 ENSDART00000157630
pimr57
Pim proto-oncogene, serine/threonine kinase, related 57
chr20_+_10727022 0.05 ENSDART00000104185
si:ch211-182e10.4
si:ch211-182e10.4
chr19_+_10860485 0.05 ENSDART00000169962
si:ch73-347e22.4
si:ch73-347e22.4
chr19_-_3783141 0.05 ENSDART00000162260
btr19
bloodthirsty-related gene family, member 19
chr22_+_29204885 0.05 ENSDART00000133409
ENSDART00000059820
ncf4
neutrophil cytosolic factor 4
chr11_+_44356707 0.04 ENSDART00000165219
srsf7b
serine/arginine-rich splicing factor 7b
chr22_-_16658996 0.04 ENSDART00000138429
si:dkey-38n4.2
si:dkey-38n4.2
chr7_-_22699716 0.04 ENSDART00000193773
BX470211.5

chr20_-_42534153 0.04 ENSDART00000061122
rfx6
regulatory factor X, 6
chr10_-_4961923 0.03 ENSDART00000050177
ENSDART00000146066
snx30
sorting nexin family member 30
chr24_+_35787629 0.03 ENSDART00000136721
si:dkeyp-7a3.1
si:dkeyp-7a3.1
chr23_+_21261313 0.03 ENSDART00000104268
ENSDART00000159046
emc1
ER membrane protein complex subunit 1
chr15_+_15771418 0.03 ENSDART00000153831
si:ch211-33e4.3
si:ch211-33e4.3
chr5_-_67911111 0.03 ENSDART00000051833
gsx1
GS homeobox 1
chr7_-_52388734 0.02 ENSDART00000174186
wdr93
WD repeat domain 93
chr5_-_12824607 0.02 ENSDART00000190310
p2rx2
purinergic receptor P2X, ligand-gated ion channel, 2
chr21_-_30408775 0.02 ENSDART00000101037
nhp2
NHP2 ribonucleoprotein homolog (yeast)
chr22_-_29205327 0.01 ENSDART00000183161
ENSDART00000189515
pvalb7
parvalbumin 7
chr13_-_25198025 0.00 ENSDART00000159585
ENSDART00000144227
adka
adenosine kinase a

Network of associatons between targets according to the STRING database.

First level regulatory network of sox7

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0018315 establishment of synaptic specificity at neuromuscular junction(GO:0007529) molybdenum incorporation into molybdenum-molybdopterin complex(GO:0018315) metal incorporation into metallo-molybdopterin complex(GO:0042040) glycine receptor clustering(GO:0072579)
0.1 0.5 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.0 0.4 GO:0043435 response to corticotropin-releasing hormone(GO:0043435) cellular response to corticotropin-releasing hormone stimulus(GO:0071376)
0.0 0.4 GO:0006599 phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314)
0.0 0.2 GO:0051703 social behavior(GO:0035176) intraspecies interaction between organisms(GO:0051703)
0.0 0.3 GO:0050714 positive regulation of protein secretion(GO:0050714)
0.0 0.4 GO:0016973 poly(A)+ mRNA export from nucleus(GO:0016973)
0.0 0.2 GO:0000056 ribosomal small subunit export from nucleus(GO:0000056)
0.0 0.1 GO:0034260 negative regulation of GTPase activity(GO:0034260)
0.0 0.1 GO:0008343 adult feeding behavior(GO:0008343) positive regulation of feeding behavior(GO:2000253)
0.0 0.2 GO:1990504 dense core granule exocytosis(GO:1990504)
0.0 0.2 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.0 GO:0045730 respiratory burst(GO:0045730)
0.0 0.4 GO:0006284 base-excision repair(GO:0006284)
0.0 0.2 GO:0098962 regulation of postsynaptic neurotransmitter receptor activity(GO:0098962)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0045283 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281) fumarate reductase complex(GO:0045283)
0.0 0.1 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 0.4 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.0 0.1 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0047256 beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity(GO:0008457) lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity(GO:0047256)
0.2 0.5 GO:0061599 molybdopterin adenylyltransferase activity(GO:0061598) molybdopterin molybdotransferase activity(GO:0061599)
0.1 0.4 GO:0008309 double-stranded DNA exodeoxyribonuclease activity(GO:0008309) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.1 0.4 GO:0042609 CD4 receptor binding(GO:0042609)
0.1 0.3 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.1 0.5 GO:0048039 ubiquinone binding(GO:0048039)
0.0 0.4 GO:0038064 protein tyrosine kinase collagen receptor activity(GO:0038062) collagen receptor activity(GO:0038064)
0.0 0.4 GO:0035259 glucocorticoid receptor binding(GO:0035259)
0.0 0.2 GO:0070181 small ribosomal subunit rRNA binding(GO:0070181)
0.0 0.1 GO:0031782 type 3 melanocortin receptor binding(GO:0031781) type 4 melanocortin receptor binding(GO:0031782)
0.0 0.4 GO:0004111 creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775)
0.0 0.2 GO:0019158 glucokinase activity(GO:0004340) hexokinase activity(GO:0004396) glucose binding(GO:0005536) fructokinase activity(GO:0008865) mannokinase activity(GO:0019158)
0.0 0.2 GO:0004962 endothelin receptor activity(GO:0004962)
0.0 0.2 GO:0004062 aryl sulfotransferase activity(GO:0004062)
0.0 0.1 GO:0030332 cyclin binding(GO:0030332)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 ST IL 13 PATHWAY Interleukin 13 (IL-13) Pathway
0.0 0.4 ST GA12 PATHWAY G alpha 12 Pathway
0.0 0.5 PID HDAC CLASSII PATHWAY Signaling events mediated by HDAC Class II