PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox8a | dr11_v1_chr12_-_1085227_1085227 | -0.69 | 1.1e-03 | Click! |
sox8b | dr11_v1_chr3_-_62403550_62403550 | -0.20 | 4.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_-_11949996 Show fit | 1.94 |
ENSDART00000163478
ENSDART00000167299 |
cleavage and polyadenylation specific factor 1 |
|
chr19_-_11950434 Show fit | 1.90 |
ENSDART00000024861
|
cleavage and polyadenylation specific factor 1 |
|
chr23_-_27235403 Show fit | 1.82 |
ENSDART00000134418
|
si:dkey-157g16.6 |
|
chr19_+_27448625 Show fit | 1.44 |
ENSDART00000052352
|
protein phosphatase 1, regulatory (inhibitor) subunit 11 |
|
chr9_+_34952203 Show fit | 1.44 |
ENSDART00000121828
ENSDART00000142347 |
transcription factor Dp-1, a |
|
chr3_-_27647845 Show fit | 1.35 |
ENSDART00000151625
|
si:ch211-157c3.4 |
|
chr11_-_30138299 Show fit | 1.33 |
ENSDART00000172106
|
Scm polycomb group protein like 2 |
|
chr17_+_24687338 Show fit | 1.26 |
ENSDART00000135794
|
selenoprotein N |
|
chr19_-_17208728 Show fit | 1.17 |
ENSDART00000151228
|
stathmin 1a |
|
chr14_+_38786298 Show fit | 1.13 |
ENSDART00000164440
|
si:ch211-195b11.3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.8 | GO:0043631 | mRNA polyadenylation(GO:0006378) RNA polyadenylation(GO:0043631) |
0.0 | 1.9 | GO:0008285 | negative regulation of cell proliferation(GO:0008285) |
0.1 | 1.8 | GO:0030322 | stabilization of membrane potential(GO:0030322) |
0.0 | 1.7 | GO:0046856 | phosphatidylinositol dephosphorylation(GO:0046856) |
0.2 | 1.4 | GO:0032515 | negative regulation of phosphoprotein phosphatase activity(GO:0032515) |
0.2 | 1.3 | GO:0050848 | regulation of calcium-mediated signaling(GO:0050848) |
0.0 | 1.3 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.1 | 1.0 | GO:0060999 | positive regulation of dendritic spine development(GO:0060999) |
0.0 | 1.0 | GO:0030866 | cortical actin cytoskeleton organization(GO:0030866) |
0.2 | 0.9 | GO:0061668 | mitochondrial ribosome assembly(GO:0061668) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.8 | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex(GO:0005847) |
0.0 | 1.8 | GO:0043204 | perikaryon(GO:0043204) |
0.0 | 1.8 | GO:0098852 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
0.2 | 0.9 | GO:0005672 | transcription factor TFIIA complex(GO:0005672) |
0.0 | 0.8 | GO:0030496 | midbody(GO:0030496) |
0.1 | 0.7 | GO:0097550 | transcriptional preinitiation complex(GO:0097550) |
0.1 | 0.7 | GO:0002102 | podosome(GO:0002102) |
0.0 | 0.7 | GO:0031105 | septin ring(GO:0005940) septin complex(GO:0031105) septin cytoskeleton(GO:0032156) |
0.0 | 0.7 | GO:0030134 | ER to Golgi transport vesicle(GO:0030134) |
0.1 | 0.6 | GO:0008290 | F-actin capping protein complex(GO:0008290) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | GO:0005516 | calmodulin binding(GO:0005516) |
0.1 | 1.9 | GO:0035064 | methylated histone binding(GO:0035064) |
0.1 | 1.8 | GO:0015271 | outward rectifier potassium channel activity(GO:0015271) |
0.2 | 1.7 | GO:0052629 | phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629) |
0.0 | 1.5 | GO:0001098 | basal transcription machinery binding(GO:0001098) basal RNA polymerase II transcription machinery binding(GO:0001099) |
0.2 | 1.4 | GO:0004865 | protein serine/threonine phosphatase inhibitor activity(GO:0004865) |
0.0 | 1.3 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.0 | 0.9 | GO:0070006 | metalloaminopeptidase activity(GO:0070006) |
0.2 | 0.8 | GO:0043998 | H2A histone acetyltransferase activity(GO:0043998) |
0.1 | 0.8 | GO:0030548 | acetylcholine receptor regulator activity(GO:0030548) neurotransmitter receptor regulator activity(GO:0099602) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 0.4 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.3 | PID PI3KCI AKT PATHWAY | Class I PI3K signaling events mediated by Akt |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.8 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.0 | 0.9 | REACTOME MITOCHONDRIAL TRNA AMINOACYLATION | Genes involved in Mitochondrial tRNA aminoacylation |
0.0 | 0.7 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.1 | 0.6 | REACTOME NFKB IS ACTIVATED AND SIGNALS SURVIVAL | Genes involved in NF-kB is activated and signals survival |
0.1 | 0.5 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
0.0 | 0.3 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
0.0 | 0.3 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |
0.0 | 0.3 | REACTOME SIGNALING BY FGFR1 FUSION MUTANTS | Genes involved in Signaling by FGFR1 fusion mutants |