PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox9b | dr11_v1_chr3_-_62527675_62527696 | 0.52 | 2.3e-02 | Click! |
sox9a | dr11_v1_chr12_-_1951233_1951284 | -0.42 | 7.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_-_26704829 Show fit | 4.54 |
ENSDART00000078563
|
neurogenin 1 |
|
chr6_-_43092175 Show fit | 2.93 |
ENSDART00000084389
|
leucine rich repeat neuronal 1 |
|
chr15_-_4528326 Show fit | 2.40 |
ENSDART00000158122
ENSDART00000155619 ENSDART00000128602 |
transcription factor Dp-2 |
|
chr23_-_21463788 Show fit | 2.31 |
ENSDART00000079265
|
hairy-related 4, tandem duplicate 4 |
|
chr23_+_21459263 Show fit | 2.09 |
ENSDART00000104209
|
hairy-related 4, tandem duplicate 3 |
|
chr9_-_46415847 Show fit | 1.95 |
ENSDART00000009790
|
connexin 43.4 |
|
chr14_-_41478265 Show fit | 1.86 |
ENSDART00000149886
ENSDART00000016002 |
tetraspanin 7 |
|
chr23_+_35708730 Show fit | 1.74 |
ENSDART00000009277
|
tubulin, alpha 1a |
|
chr22_-_10541372 Show fit | 1.74 |
ENSDART00000179708
|
si:dkey-42i9.4 |
|
chr16_+_35535375 Show fit | 1.67 |
ENSDART00000171675
|
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.5 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
0.2 | 4.8 | GO:0080111 | DNA demethylation(GO:0080111) |
0.9 | 4.5 | GO:0021516 | dorsal spinal cord development(GO:0021516) anterior lateral line nerve development(GO:0048909) |
0.0 | 4.5 | GO:0009952 | anterior/posterior pattern specification(GO:0009952) |
0.5 | 4.4 | GO:0021628 | olfactory nerve development(GO:0021553) olfactory nerve morphogenesis(GO:0021627) olfactory nerve formation(GO:0021628) |
0.5 | 4.1 | GO:0071539 | protein localization to centrosome(GO:0071539) |
0.2 | 2.9 | GO:0000727 | double-strand break repair via break-induced replication(GO:0000727) |
0.0 | 2.8 | GO:0045930 | negative regulation of mitotic cell cycle(GO:0045930) |
0.8 | 2.5 | GO:1904251 | regulation of bile acid biosynthetic process(GO:0070857) regulation of bile acid metabolic process(GO:1904251) |
0.3 | 2.4 | GO:0021634 | optic nerve formation(GO:0021634) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.9 | GO:0005814 | centriole(GO:0005814) |
0.0 | 5.9 | GO:0005667 | transcription factor complex(GO:0005667) |
0.0 | 5.6 | GO:0016607 | nuclear speck(GO:0016607) |
0.1 | 2.3 | GO:0032039 | integrator complex(GO:0032039) |
0.0 | 2.1 | GO:0005813 | centrosome(GO:0005813) |
0.1 | 2.0 | GO:0070822 | Sin3-type complex(GO:0070822) |
0.1 | 1.7 | GO:0071564 | npBAF complex(GO:0071564) |
0.0 | 1.6 | GO:0005925 | focal adhesion(GO:0005925) |
0.3 | 1.5 | GO:0097433 | dense body(GO:0097433) |
0.1 | 1.5 | GO:0042555 | MCM complex(GO:0042555) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 31.0 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.0 | 11.1 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.0 | 6.4 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.0 | 4.8 | GO:0003713 | transcription coactivator activity(GO:0003713) |
0.6 | 4.5 | GO:0070888 | E-box binding(GO:0070888) |
0.0 | 4.3 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.8 | 4.1 | GO:0008311 | double-stranded DNA exodeoxyribonuclease activity(GO:0008309) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311) |
0.0 | 4.0 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 3.2 | GO:0042393 | histone binding(GO:0042393) |
0.2 | 2.5 | GO:0005007 | fibroblast growth factor-activated receptor activity(GO:0005007) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.9 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 4.5 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.2 | 4.4 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.1 | 3.5 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.1 | 2.6 | PID FGF PATHWAY | FGF signaling pathway |
0.1 | 2.2 | PID EPHB FWD PATHWAY | EPHB forward signaling |
0.0 | 2.1 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.1 | 1.8 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
0.0 | 1.5 | PID LKB1 PATHWAY | LKB1 signaling events |
0.0 | 1.3 | PID ILK PATHWAY | Integrin-linked kinase signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.1 | REACTOME BASE FREE SUGAR PHOSPHATE REMOVAL VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Base-free sugar-phosphate removal via the single-nucleotide replacement pathway |
0.3 | 2.5 | REACTOME FGFR4 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR4 ligand binding and activation |
0.0 | 2.4 | REACTOME AUTODEGRADATION OF CDH1 BY CDH1 APC C | Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C |
0.0 | 1.9 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
0.1 | 1.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.1 | 1.4 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.1 | 1.1 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.0 | 1.1 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.3 | 1.0 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.1 | 1.0 | REACTOME NOTCH HLH TRANSCRIPTION PATHWAY | Genes involved in Notch-HLH transcription pathway |