PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sp1 | dr11_v1_chr11_-_28747_28747 | 0.75 | 2.1e-04 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 8.6 | GO:0018149 | peptide cross-linking(GO:0018149) |
0.3 | 8.4 | GO:0035329 | hippo signaling(GO:0035329) |
0.1 | 8.1 | GO:0070121 | Kupffer's vesicle development(GO:0070121) |
0.3 | 6.6 | GO:0030878 | thyroid gland development(GO:0030878) |
0.0 | 5.6 | GO:0043484 | regulation of RNA splicing(GO:0043484) |
0.4 | 5.0 | GO:0002043 | blood vessel endothelial cell proliferation involved in sprouting angiogenesis(GO:0002043) |
0.0 | 4.9 | GO:0007219 | Notch signaling pathway(GO:0007219) |
0.6 | 4.8 | GO:0035912 | aorta morphogenesis(GO:0035909) dorsal aorta morphogenesis(GO:0035912) |
0.4 | 4.7 | GO:0090308 | methylation-dependent chromatin silencing(GO:0006346) positive regulation of chromatin silencing(GO:0031937) regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309) |
1.1 | 4.5 | GO:0033301 | cell cycle comprising mitosis without cytokinesis(GO:0033301) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 87.7 | GO:0005634 | nucleus(GO:0005634) |
0.1 | 9.9 | GO:0005923 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.0 | 8.2 | GO:0000785 | chromatin(GO:0000785) |
0.1 | 6.4 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.0 | 5.9 | GO:0005667 | transcription factor complex(GO:0005667) |
0.1 | 4.6 | GO:0031901 | early endosome membrane(GO:0031901) |
1.0 | 4.0 | GO:0044611 | nuclear pore inner ring(GO:0044611) |
0.0 | 3.9 | GO:0016459 | myosin complex(GO:0016459) |
0.1 | 3.4 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
0.2 | 3.3 | GO:0030127 | COPII vesicle coat(GO:0030127) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 49.1 | GO:0001159 | core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
0.0 | 11.8 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.4 | 10.4 | GO:0005112 | Notch binding(GO:0005112) |
0.0 | 8.8 | GO:0030695 | GTPase regulator activity(GO:0030695) |
0.4 | 8.6 | GO:0003810 | protein-glutamine gamma-glutamyltransferase activity(GO:0003810) |
0.1 | 8.6 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 7.3 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.0 | 6.6 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.8 | 6.4 | GO:0001217 | bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding(GO:0001217) |
0.1 | 6.4 | GO:0031491 | nucleosome binding(GO:0031491) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 6.5 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 4.4 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.2 | 4.2 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.1 | 4.0 | PID INTEGRIN3 PATHWAY | Beta3 integrin cell surface interactions |
0.1 | 3.5 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.1 | 3.1 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.1 | 2.9 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 2.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 2.3 | PID ATM PATHWAY | ATM pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.3 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 5.1 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.1 | 4.6 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.4 | 4.3 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.5 | 4.1 | REACTOME RECEPTOR LIGAND BINDING INITIATES THE SECOND PROTEOLYTIC CLEAVAGE OF NOTCH RECEPTOR | Genes involved in Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor |
0.2 | 4.1 | REACTOME ELONGATION ARREST AND RECOVERY | Genes involved in Elongation arrest and recovery |
0.0 | 3.8 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.0 | 3.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.1 | 3.4 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.1 | 2.9 | REACTOME CHONDROITIN SULFATE DERMATAN SULFATE METABOLISM | Genes involved in Chondroitin sulfate/dermatan sulfate metabolism |