PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sp2 | dr11_v1_chr11_-_12008001_12008001 | -0.05 | 8.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_16941319 Show fit | 8.67 |
ENSDART00000109968
|
zgc:174855 |
|
chr23_-_46201008 Show fit | 8.32 |
ENSDART00000160110
|
transglutaminase 1 like 4 |
|
chr12_-_16764751 Show fit | 7.76 |
ENSDART00000113862
|
zgc:174154 |
|
chr18_-_46010 Show fit | 7.38 |
ENSDART00000052641
|
glycine amidinotransferase (L-arginine:glycine amidinotransferase) |
|
chr9_+_15890558 Show fit | 5.63 |
ENSDART00000144032
|
si:dkey-14o1.20 |
|
chr16_-_7793457 Show fit | 4.87 |
ENSDART00000113483
|
tripartite motif containing 71, E3 ubiquitin protein ligase |
|
chr20_+_33987465 Show fit | 4.73 |
ENSDART00000061751
|
zona pellucida glycoprotein 3a, tandem duplicate 2 |
|
chr18_-_127558 Show fit | 4.64 |
ENSDART00000149556
|
transient receptor potential cation channel, subfamily M, member 7 |
|
chr5_+_43870389 Show fit | 4.44 |
ENSDART00000141002
|
zgc:112966 |
|
chr5_+_23136544 Show fit | 4.16 |
ENSDART00000003428
ENSDART00000109340 ENSDART00000171039 ENSDART00000178821 |
phosphoribosyl pyrophosphate synthetase 1A |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 17.1 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
0.6 | 10.3 | GO:0060046 | binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344) |
3.2 | 9.6 | GO:0006600 | creatine metabolic process(GO:0006600) creatine biosynthetic process(GO:0006601) |
2.9 | 8.7 | GO:0010961 | cellular magnesium ion homeostasis(GO:0010961) |
0.4 | 8.3 | GO:0018149 | peptide cross-linking(GO:0018149) |
1.0 | 4.9 | GO:0010586 | miRNA metabolic process(GO:0010586) |
0.4 | 4.8 | GO:0006346 | methylation-dependent chromatin silencing(GO:0006346) positive regulation of chromatin silencing(GO:0031937) regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309) |
0.3 | 4.8 | GO:0030878 | thyroid gland development(GO:0030878) |
0.0 | 4.3 | GO:0043484 | regulation of RNA splicing(GO:0043484) |
1.0 | 4.2 | GO:0006015 | 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 17.2 | GO:0005764 | lysosome(GO:0005764) |
0.0 | 10.2 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.0 | 5.7 | GO:0031012 | extracellular matrix(GO:0031012) |
1.0 | 4.2 | GO:0002189 | ribose phosphate diphosphokinase complex(GO:0002189) |
0.0 | 4.0 | GO:0016607 | nuclear speck(GO:0016607) |
0.6 | 3.9 | GO:0005674 | transcription factor TFIIF complex(GO:0005674) |
0.0 | 3.6 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
0.1 | 3.5 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.0 | 3.2 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.8 | 3.0 | GO:0061673 | mitotic spindle astral microtubule(GO:0061673) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 16.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.9 | 10.3 | GO:0035804 | structural constituent of egg coat(GO:0035804) |
0.3 | 9.8 | GO:0016769 | transferase activity, transferring nitrogenous groups(GO:0016769) |
0.4 | 8.3 | GO:0003810 | protein-glutamine gamma-glutamyltransferase activity(GO:0003810) |
0.6 | 8.2 | GO:0047631 | ADP-ribose diphosphatase activity(GO:0047631) |
0.2 | 5.8 | GO:0005112 | Notch binding(GO:0005112) |
0.5 | 4.9 | GO:0035198 | miRNA binding(GO:0035198) |
0.0 | 4.4 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
1.0 | 4.2 | GO:0004749 | ribose phosphate diphosphokinase activity(GO:0004749) |
1.0 | 3.9 | GO:0001096 | TFIIF-class transcription factor binding(GO:0001096) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.8 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 3.7 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.1 | 2.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 2.2 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
0.0 | 1.8 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 1.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 1.5 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.0 | 1.3 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.1 | 1.0 | PID IL23 PATHWAY | IL23-mediated signaling events |
0.0 | 1.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.3 | 5.4 | REACTOME KINESINS | Genes involved in Kinesins |
0.3 | 3.9 | REACTOME VIRAL MESSENGER RNA SYNTHESIS | Genes involved in Viral Messenger RNA Synthesis |
0.0 | 3.8 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.2 | 3.4 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.0 | 3.0 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
0.3 | 2.9 | REACTOME ENDOGENOUS STEROLS | Genes involved in Endogenous sterols |
0.3 | 2.6 | REACTOME HYALURONAN UPTAKE AND DEGRADATION | Genes involved in Hyaluronan uptake and degradation |
0.1 | 2.4 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.0 | 2.3 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |