PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sp3b | dr11_v1_chr6_-_10740365_10740365 | 0.71 | 6.4e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_77557279 Show fit | 3.98 |
ENSDART00000180113
|
|
|
chr5_-_1047222 Show fit | 2.49 |
ENSDART00000181112
|
methyl-CpG binding domain protein 2 |
|
chr13_+_1100197 Show fit | 2.05 |
ENSDART00000139560
|
protein phosphatase 3, regulatory subunit B, alpha a |
|
chr3_-_62380146 Show fit | 1.95 |
ENSDART00000155853
|
G protein-coupled receptor, class C, group 5, member Ba |
|
chr2_+_58221163 Show fit | 1.95 |
ENSDART00000157939
|
|
|
chr8_+_43056153 Show fit | 1.80 |
ENSDART00000186377
|
prion protein a |
|
chr14_-_2933185 Show fit | 1.54 |
ENSDART00000161677
ENSDART00000162446 ENSDART00000109378 |
si:dkey-201i24.6 |
|
chr17_+_12075805 Show fit | 1.47 |
ENSDART00000155329
|
consortin, connexin sorting protein a |
|
chr8_+_1082100 Show fit | 1.46 |
ENSDART00000149276
|
leucine zipper, putative tumor suppressor family member 3b |
|
chr6_-_60104628 Show fit | 1.31 |
ENSDART00000057463
ENSDART00000169188 |
prostate transmembrane protein, androgen induced 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.8 | GO:0090630 | activation of GTPase activity(GO:0090630) |
0.2 | 1.6 | GO:0098971 | dendritic transport(GO:0098935) anterograde dendritic transport(GO:0098937) anterograde dendritic transport of neurotransmitter receptor complex(GO:0098971) |
0.1 | 1.6 | GO:0060287 | epithelial cilium movement involved in determination of left/right asymmetry(GO:0060287) |
0.0 | 1.6 | GO:1901385 | regulation of voltage-gated calcium channel activity(GO:1901385) |
0.5 | 1.5 | GO:0042998 | positive regulation of Golgi to plasma membrane protein transport(GO:0042998) positive regulation of establishment of protein localization to plasma membrane(GO:0090004) |
0.1 | 1.5 | GO:0061001 | regulation of dendritic spine morphogenesis(GO:0061001) |
0.4 | 1.3 | GO:0019695 | choline metabolic process(GO:0019695) |
0.2 | 1.3 | GO:0060394 | negative regulation of pathway-restricted SMAD protein phosphorylation(GO:0060394) |
0.0 | 1.3 | GO:0048268 | clathrin coat assembly(GO:0048268) |
0.4 | 1.1 | GO:0051580 | regulation of neurotransmitter uptake(GO:0051580) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.2 | GO:0031901 | early endosome membrane(GO:0031901) |
0.4 | 2.7 | GO:0070062 | extracellular exosome(GO:0070062) |
0.0 | 2.7 | GO:0043197 | dendritic spine(GO:0043197) neuron spine(GO:0044309) |
0.0 | 2.1 | GO:0005871 | kinesin complex(GO:0005871) |
0.0 | 1.7 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.0 | 1.6 | GO:0042383 | sarcolemma(GO:0042383) |
0.1 | 1.4 | GO:0016581 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
0.0 | 1.4 | GO:0044853 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.2 | 1.2 | GO:0030314 | junctional membrane complex(GO:0030314) |
0.0 | 1.1 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | GO:0019209 | kinase activator activity(GO:0019209) protein kinase activator activity(GO:0030295) |
0.2 | 1.8 | GO:0016721 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
0.1 | 1.6 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.0 | 1.6 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
0.4 | 1.5 | GO:0071253 | connexin binding(GO:0071253) |
0.3 | 1.4 | GO:0030169 | low-density lipoprotein particle binding(GO:0030169) |
0.0 | 1.4 | GO:0005242 | inward rectifier potassium channel activity(GO:0005242) |
0.3 | 1.3 | GO:0070412 | R-SMAD binding(GO:0070412) |
0.1 | 1.2 | GO:0008327 | methyl-CpG binding(GO:0008327) |
0.0 | 1.2 | GO:0017154 | semaphorin receptor activity(GO:0017154) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.0 | PID PI3KCI AKT PATHWAY | Class I PI3K signaling events mediated by Akt |
0.1 | 1.8 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 1.7 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.0 | 1.5 | PID BCR 5PATHWAY | BCR signaling pathway |
0.1 | 1.1 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.1 | 1.1 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 1.1 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 0.8 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.1 | 0.7 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 0.7 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.1 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.1 | 1.8 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |
0.1 | 1.6 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.0 | 1.6 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 1.3 | REACTOME TGF BETA RECEPTOR SIGNALING ACTIVATES SMADS | Genes involved in TGF-beta receptor signaling activates SMADs |
0.1 | 0.9 | REACTOME NEGATIVE REGULATION OF THE PI3K AKT NETWORK | Genes involved in Negative regulation of the PI3K/AKT network |
0.0 | 0.9 | REACTOME ANTIGEN PROCESSING CROSS PRESENTATION | Genes involved in Antigen processing-Cross presentation |
0.0 | 0.8 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
0.0 | 0.7 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.0 | 0.7 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |