PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
spi1a | dr11_v1_chr25_+_35553542_35553542 | 0.46 | 4.6e-02 | Click! |
spi1b | dr11_v1_chr7_-_32659345_32659353 | 0.24 | 3.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_-_26482096 Show fit | 3.37 |
ENSDART00000187280
|
SMAD family member 5 |
|
chr10_+_13209580 Show fit | 3.28 |
ENSDART00000000887
ENSDART00000136932 |
Ras association (RalGDS/AF-6) domain family 6 |
|
chr6_-_8360918 Show fit | 3.05 |
ENSDART00000004716
|
acid phosphatase 5a, tartrate resistant |
|
chr7_+_15736230 Show fit | 3.03 |
ENSDART00000109942
|
multiple C2 domains, transmembrane 2b |
|
chr23_-_21453614 Show fit | 2.83 |
ENSDART00000079274
|
hairy-related 4, tandem duplicate 1 |
|
chr21_+_20715020 Show fit | 2.81 |
ENSDART00000015224
|
growth arrest and DNA-damage-inducible, gamma b, tandem duplicate 1 |
|
chr4_+_5523690 Show fit | 2.78 |
ENSDART00000027304
|
mitogen-activated protein kinase 12b |
|
chr8_-_23758312 Show fit | 2.78 |
ENSDART00000132659
|
si:ch211-163l21.4 |
|
chr16_-_24832038 Show fit | 2.72 |
ENSDART00000153731
|
si:dkey-79d12.5 |
|
chr23_-_21471022 Show fit | 2.66 |
ENSDART00000104206
|
hairy-related 4, tandem duplicate 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 11.0 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
0.2 | 5.4 | GO:0000387 | spliceosomal snRNP assembly(GO:0000387) |
0.1 | 5.0 | GO:0016575 | histone deacetylation(GO:0016575) |
0.1 | 4.9 | GO:0071166 | ribonucleoprotein complex localization(GO:0071166) |
0.1 | 4.6 | GO:0042273 | ribosomal large subunit biogenesis(GO:0042273) |
0.9 | 4.4 | GO:0016103 | diterpenoid catabolic process(GO:0016103) terpenoid catabolic process(GO:0016115) retinoic acid catabolic process(GO:0034653) |
0.1 | 4.4 | GO:0031647 | regulation of protein stability(GO:0031647) |
0.0 | 4.2 | GO:0006364 | rRNA processing(GO:0006364) |
0.3 | 4.0 | GO:0051121 | lipoxygenase pathway(GO:0019372) linoleic acid metabolic process(GO:0043651) hepoxilin metabolic process(GO:0051121) hepoxilin biosynthetic process(GO:0051122) |
0.5 | 3.9 | GO:0036372 | opsin transport(GO:0036372) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 54.4 | GO:0005634 | nucleus(GO:0005634) |
0.1 | 14.0 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 11.5 | GO:0005694 | chromosome(GO:0005694) |
0.1 | 7.9 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.4 | 6.0 | GO:0036038 | MKS complex(GO:0036038) |
0.0 | 5.8 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.2 | 5.7 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.2 | 5.1 | GO:0032040 | small-subunit processome(GO:0032040) |
0.1 | 4.8 | GO:0005940 | septin ring(GO:0005940) septin complex(GO:0031105) septin cytoskeleton(GO:0032156) |
0.0 | 4.6 | GO:0005813 | centrosome(GO:0005813) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 37.9 | GO:0003677 | DNA binding(GO:0003677) |
0.0 | 18.1 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.0 | 13.5 | GO:0003676 | nucleic acid binding(GO:0003676) |
0.1 | 10.0 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.1 | 9.5 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 9.3 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.0 | 7.4 | GO:0003924 | GTPase activity(GO:0003924) |
0.1 | 7.0 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.1 | 6.0 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
0.0 | 5.7 | GO:0003682 | chromatin binding(GO:0003682) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.8 | PID AURORA B PATHWAY | Aurora B signaling |
0.2 | 7.9 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 5.7 | PID E2F PATHWAY | E2F transcription factor network |
0.3 | 4.3 | PID ALK2 PATHWAY | ALK2 signaling events |
0.1 | 4.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.5 | 3.9 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.1 | 3.6 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.2 | 3.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.1 | 3.0 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.1 | 2.9 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.0 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.2 | 5.9 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.2 | 5.6 | REACTOME RNA POL I TRANSCRIPTION INITIATION | Genes involved in RNA Polymerase I Transcription Initiation |
0.2 | 4.4 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.2 | 4.3 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.4 | 4.0 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.2 | 4.0 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |
0.2 | 3.9 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.2 | 3.5 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.3 | 3.4 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |