PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
spi2 | dr11_v1_chr4_-_17803784_17803784 | 0.41 | 8.5e-02 | Click! |
spic | dr11_v1_chr4_-_17812131_17812131 | 0.19 | 4.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_51998708 Show fit | 2.37 |
ENSDART00000097194
|
serine incorporator 5 |
|
chr1_-_21723329 Show fit | 1.82 |
ENSDART00000137138
|
si:ch211-134c9.2 |
|
chr22_+_5135193 Show fit | 1.79 |
ENSDART00000106156
|
myeloid-derived growth factor |
|
chr5_+_24086227 Show fit | 1.76 |
ENSDART00000051549
ENSDART00000177458 ENSDART00000135934 |
tumor protein p53 |
|
chr5_-_51166025 Show fit | 1.76 |
ENSDART00000097471
|
caspase recruitment domain family, member 9 |
|
chr8_-_50888806 Show fit | 1.70 |
ENSDART00000053750
|
acyl-CoA synthetase long chain family member 2 |
|
chr20_+_36812368 Show fit | 1.68 |
ENSDART00000062931
|
ABRA C-terminal like |
|
chr17_-_28811747 Show fit | 1.68 |
ENSDART00000001444
|
G2/M-phase specific E3 ubiquitin protein ligase |
|
chr3_-_16719244 Show fit | 1.65 |
ENSDART00000055859
|
polymerase (DNA directed), delta 1, catalytic subunit |
|
chr2_+_38288308 Show fit | 1.59 |
ENSDART00000170672
|
neural precursor cell expressed, developmentally down-regulated 8, like |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 16.7 | GO:0006397 | mRNA processing(GO:0006397) |
0.0 | 4.5 | GO:0006412 | translation(GO:0006412) |
0.1 | 4.0 | GO:0032456 | endocytic recycling(GO:0032456) |
0.2 | 3.5 | GO:0006658 | phosphatidylserine metabolic process(GO:0006658) |
0.0 | 3.0 | GO:0006457 | protein folding(GO:0006457) |
0.1 | 2.6 | GO:0050650 | chondroitin sulfate proteoglycan biosynthetic process(GO:0050650) |
0.4 | 2.2 | GO:0000244 | spliceosomal tri-snRNP complex assembly(GO:0000244) |
0.3 | 2.2 | GO:0072401 | signal transduction involved in DNA integrity checkpoint(GO:0072401) signal transduction involved in DNA damage checkpoint(GO:0072422) signal transduction involved in G2 DNA damage checkpoint(GO:0072425) |
0.1 | 2.2 | GO:0035108 | limb morphogenesis(GO:0035108) |
0.0 | 2.2 | GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling(GO:0043123) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.2 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 3.3 | GO:0005762 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.0 | 3.2 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.1 | 3.0 | GO:0005685 | U1 snRNP(GO:0005685) |
0.0 | 3.0 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.0 | 2.1 | GO:0005681 | spliceosomal complex(GO:0005681) |
0.0 | 2.0 | GO:0000776 | kinetochore(GO:0000776) |
0.1 | 1.9 | GO:0005885 | Arp2/3 protein complex(GO:0005885) |
0.0 | 1.9 | GO:0005840 | ribosome(GO:0005840) |
0.3 | 1.7 | GO:0043625 | delta DNA polymerase complex(GO:0043625) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.6 | GO:0005525 | GTP binding(GO:0005525) |
0.0 | 5.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.4 | 3.4 | GO:0030619 | U1 snRNA binding(GO:0030619) |
0.0 | 2.7 | GO:0003743 | translation initiation factor activity(GO:0003743) |
0.0 | 2.6 | GO:0051082 | unfolded protein binding(GO:0051082) |
0.1 | 2.5 | GO:0042162 | telomeric DNA binding(GO:0042162) |
0.0 | 1.9 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
0.0 | 1.9 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
0.6 | 1.8 | GO:0043185 | vascular endothelial growth factor receptor 3 binding(GO:0043185) |
0.1 | 1.8 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.7 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.2 | 2.3 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 2.1 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.0 | 1.9 | PID PLK1 PATHWAY | PLK1 signaling events |
0.3 | 1.8 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
0.2 | 1.8 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.0 | 1.5 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 1.4 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 1.3 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 1.2 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.7 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.1 | 2.5 | REACTOME HEPARAN SULFATE HEPARIN HS GAG METABOLISM | Genes involved in Heparan sulfate/heparin (HS-GAG) metabolism |
0.2 | 2.3 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.1 | 2.3 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.1 | 2.0 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.1 | 1.9 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.3 | 1.8 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
0.2 | 1.8 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.1 | 1.7 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.1 | 1.6 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |