PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
srfb | dr11_v1_chr13_-_51922290_51922290 | -0.77 | 1.3e-04 | Click! |
srfa | dr11_v1_chr22_+_35089031_35089031 | 0.14 | 5.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_-_21336385 Show fit | 23.84 |
ENSDART00000054460
|
early growth response 1 |
|
chr15_-_551177 Show fit | 14.86 |
ENSDART00000066774
ENSDART00000154617 |
transgelin |
|
chr8_+_40628926 Show fit | 8.85 |
ENSDART00000163598
|
dual specificity phosphatase 2 |
|
chr9_-_44948488 Show fit | 8.23 |
ENSDART00000059228
|
villin 1 |
|
chr11_+_25459697 Show fit | 7.33 |
ENSDART00000161481
|
opsin 1 (cone pigments), short-wave-sensitive 2 |
|
chr2_+_58221163 Show fit | 7.24 |
ENSDART00000157939
|
|
|
chr21_+_30043054 Show fit | 6.95 |
ENSDART00000065448
|
fatty acid binding protein 6, ileal (gastrotropin) |
|
chr17_-_15611744 Show fit | 5.37 |
ENSDART00000010496
|
four and a half LIM domains 5 |
|
chr23_+_45579497 Show fit | 5.29 |
ENSDART00000110381
|
early growth response 4 |
|
chr5_-_32309129 Show fit | 5.21 |
ENSDART00000123003
|
myosin, heavy polypeptide 1.1, skeletal muscle |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 23.8 | GO:0060059 | embryonic retina morphogenesis in camera-type eye(GO:0060059) |
2.1 | 8.2 | GO:0072673 | lamellipodium morphogenesis(GO:0072673) regulation of lamellipodium morphogenesis(GO:2000392) |
0.5 | 7.6 | GO:0035970 | peptidyl-threonine dephosphorylation(GO:0035970) |
0.1 | 6.1 | GO:0061515 | myeloid cell development(GO:0061515) |
0.1 | 5.5 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
0.6 | 4.8 | GO:0019441 | tryptophan catabolic process to kynurenine(GO:0019441) |
0.4 | 4.8 | GO:0050909 | sensory perception of taste(GO:0050909) |
0.1 | 4.7 | GO:0007596 | blood coagulation(GO:0007596) |
0.5 | 4.3 | GO:0032889 | regulation of vacuole fusion, non-autophagic(GO:0032889) |
0.3 | 4.2 | GO:0061026 | cardiac muscle tissue regeneration(GO:0061026) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 13.8 | GO:0005615 | extracellular space(GO:0005615) |
0.1 | 13.3 | GO:0016459 | myosin complex(GO:0016459) |
0.2 | 8.5 | GO:0031941 | filamentous actin(GO:0031941) |
1.6 | 8.2 | GO:0032433 | filopodium tip(GO:0032433) |
0.1 | 5.5 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.1 | 4.7 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.2 | 4.4 | GO:0031430 | M band(GO:0031430) |
0.5 | 4.3 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.0 | 3.6 | GO:0005667 | transcription factor complex(GO:0005667) |
0.1 | 2.6 | GO:0098844 | postsynaptic endocytic zone membrane(GO:0098844) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 23.8 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
0.1 | 19.3 | GO:0051015 | actin filament binding(GO:0051015) |
0.1 | 7.7 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
0.5 | 7.6 | GO:0008330 | protein tyrosine/threonine phosphatase activity(GO:0008330) |
1.2 | 7.0 | GO:0032052 | bile acid binding(GO:0032052) |
0.3 | 6.9 | GO:0051371 | muscle alpha-actinin binding(GO:0051371) alpha-actinin binding(GO:0051393) |
0.1 | 5.7 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
0.1 | 5.5 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
1.6 | 4.8 | GO:0004833 | tryptophan 2,3-dioxygenase activity(GO:0004833) |
0.2 | 4.7 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 32.7 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.1 | 15.2 | PID PDGFRB PATHWAY | PDGFR-beta signaling pathway |
0.1 | 5.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.1 | 3.0 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.3 | 2.5 | PID NECTIN PATHWAY | Nectin adhesion pathway |
0.2 | 2.1 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.0 | 2.0 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 1.6 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
0.0 | 0.6 | PID FCER1 PATHWAY | Fc-epsilon receptor I signaling in mast cells |
0.1 | 0.5 | PID ERBB1 RECEPTOR PROXIMAL PATHWAY | EGF receptor (ErbB1) signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 24.3 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.2 | 7.7 | REACTOME MUSCLE CONTRACTION | Genes involved in Muscle contraction |
1.2 | 7.0 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.0 | 4.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.2 | 4.3 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.1 | 2.7 | REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE | Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase |
0.8 | 2.5 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
0.1 | 2.1 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.2 | 2.0 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |
0.1 | 1.6 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |