PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000006266 | signal transducer and activator of transcription 1a | |
ENSDARG00000031647 | signal transducer and activator of transcription 2 | |
ENSDARG00000076182 | signal transducer and activator of transcription 1b |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
stat1a | dr11_v1_chr22_+_12798569_12798569 | 0.95 | 3.4e-10 | Click! |
stat2 | dr11_v1_chr6_-_39158953_39158953 | 0.66 | 2.0e-03 | Click! |
stat1b | dr11_v1_chr9_+_41218967_41218974 | 0.59 | 8.2e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_61205711 Show fit | 12.69 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr12_-_3252263 Show fit | 8.28 |
ENSDART00000170632
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2b |
|
chr16_-_36834505 Show fit | 8.00 |
ENSDART00000141275
ENSDART00000139588 ENSDART00000041993 |
purine nucleoside phosphorylase 4b |
|
chr5_-_30620625 Show fit | 7.60 |
ENSDART00000098273
|
transcobalamin like |
|
chr7_+_73295890 Show fit | 7.44 |
ENSDART00000174331
ENSDART00000174250 |
|
|
chr20_+_10166297 Show fit | 6.98 |
ENSDART00000141877
|
potassium channel, subfamily K, member 10a |
|
chr6_+_41503854 Show fit | 6.74 |
ENSDART00000136538
ENSDART00000140108 ENSDART00000084861 |
cytokine inducible SH2-containing protein |
|
chr17_-_6730247 Show fit | 6.59 |
ENSDART00000031091
|
visinin-like 1b |
|
chr21_+_39100289 Show fit | 6.19 |
ENSDART00000075958
|
solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 |
|
chr13_+_52061034 Show fit | 5.92 |
ENSDART00000170383
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.8 | 12.6 | GO:1904893 | negative regulation of JAK-STAT cascade(GO:0046426) negative regulation of STAT cascade(GO:1904893) |
0.3 | 7.0 | GO:0030322 | stabilization of membrane potential(GO:0030322) |
0.1 | 6.7 | GO:0008045 | motor neuron axon guidance(GO:0008045) |
0.2 | 5.8 | GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0007157) |
0.0 | 5.8 | GO:0006814 | sodium ion transport(GO:0006814) |
0.8 | 5.5 | GO:0034389 | lipid particle organization(GO:0034389) |
0.2 | 5.2 | GO:0017121 | phospholipid scrambling(GO:0017121) |
1.7 | 5.1 | GO:0070314 | G1 to G0 transition(GO:0070314) |
0.0 | 4.9 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.6 | 4.7 | GO:0032889 | regulation of vacuole fusion, non-autophagic(GO:0032889) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 14.9 | GO:0005942 | phosphatidylinositol 3-kinase complex(GO:0005942) |
0.1 | 9.8 | GO:0005581 | collagen trimer(GO:0005581) |
0.5 | 8.3 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.1 | 7.6 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.0 | 6.9 | GO:0005912 | adherens junction(GO:0005912) |
0.1 | 6.2 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.1 | 4.8 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.6 | 4.7 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.1 | 4.2 | GO:0016342 | catenin complex(GO:0016342) |
0.0 | 4.1 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 15.9 | GO:0005509 | calcium ion binding(GO:0005509) |
0.5 | 14.9 | GO:0046935 | 1-phosphatidylinositol-3-kinase regulator activity(GO:0046935) |
0.4 | 8.3 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.9 | 8.0 | GO:0004731 | purine-nucleoside phosphorylase activity(GO:0004731) |
0.1 | 7.4 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.3 | 7.0 | GO:0022841 | leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842) |
0.0 | 6.9 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.0 | 6.3 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.4 | 5.2 | GO:0017128 | phospholipid scramblase activity(GO:0017128) |
0.1 | 5.0 | GO:0045296 | cadherin binding(GO:0045296) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.3 | NABA COLLAGENS | Genes encoding collagen proteins |
1.3 | 6.7 | ST INTERFERON GAMMA PATHWAY | Interferon gamma pathway. |
0.1 | 3.0 | PID IL2 1PATHWAY | IL2-mediated signaling events |
0.1 | 2.1 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 2.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.9 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.2 | 1.5 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.1 | 1.5 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.0 | 0.8 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.0 | 0.6 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 9.7 | REACTOME GROWTH HORMONE RECEPTOR SIGNALING | Genes involved in Growth hormone receptor signaling |
0.2 | 7.9 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.4 | 7.2 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.1 | 4.8 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.2 | 4.7 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.2 | 1.8 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.0 | 1.7 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.0 | 1.7 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.0 | 1.6 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
0.1 | 1.5 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF RAS | Genes involved in CREB phosphorylation through the activation of Ras |