PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
stat3 | dr11_v1_chr3_+_17030665_17030704 | -0.76 | 1.8e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_16595177 Show fit | 2.68 |
ENSDART00000133962
|
si:dkey-239j18.2 |
|
chr12_-_16941319 Show fit | 2.58 |
ENSDART00000109968
|
zgc:174855 |
|
chr12_+_16949391 Show fit | 2.26 |
ENSDART00000152635
|
zgc:174153 |
|
chr19_+_10846182 Show fit | 1.53 |
ENSDART00000168479
|
apolipoprotein A-IV a |
|
chr13_+_33651416 Show fit | 1.45 |
ENSDART00000180221
|
|
|
chr13_+_14976108 Show fit | 1.41 |
ENSDART00000011520
|
notochord homeobox |
|
chr19_-_47782916 Show fit | 1.35 |
ENSDART00000063337
|
cell division cycle associated 8 |
|
chr23_+_42414652 Show fit | 1.34 |
ENSDART00000171119
|
cytochrome P450, family 2, subfamily AA, polypeptide 9 |
|
chr19_-_47782586 Show fit | 1.27 |
ENSDART00000177126
|
cell division cycle associated 8 |
|
chr21_-_34844059 Show fit | 1.14 |
ENSDART00000136402
|
zgc:56585 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.4 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
0.0 | 2.6 | GO:0000070 | mitotic sister chromatid segregation(GO:0000070) |
0.0 | 2.6 | GO:0042157 | lipoprotein metabolic process(GO:0042157) |
0.1 | 1.5 | GO:0006949 | syncytium formation by plasma membrane fusion(GO:0000768) syncytium formation(GO:0006949) |
0.0 | 1.5 | GO:0017144 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.4 | 1.4 | GO:0048327 | axial mesodermal cell differentiation(GO:0048321) axial mesodermal cell fate commitment(GO:0048322) axial mesodermal cell fate specification(GO:0048327) axial mesoderm structural organization(GO:0048331) mesoderm structural organization(GO:0048338) |
0.0 | 1.3 | GO:0042273 | ribosomal large subunit biogenesis(GO:0042273) |
0.0 | 1.2 | GO:0006406 | mRNA export from nucleus(GO:0006406) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427) |
0.0 | 1.0 | GO:0019835 | cytolysis(GO:0019835) |
0.0 | 1.0 | GO:0043049 | otic placode formation(GO:0043049) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.4 | GO:0005764 | lysosome(GO:0005764) |
0.4 | 2.6 | GO:0032133 | chromosome passenger complex(GO:0032133) |
0.2 | 1.1 | GO:0000347 | THO complex(GO:0000347) THO complex part of transcription export complex(GO:0000445) |
0.1 | 1.0 | GO:1990589 | ATF4-CREB1 transcription factor complex(GO:1990589) |
0.1 | 1.0 | GO:0005579 | membrane attack complex(GO:0005579) |
0.0 | 1.0 | GO:0034399 | preribosome, large subunit precursor(GO:0030687) nuclear periphery(GO:0034399) |
0.0 | 0.9 | GO:0005839 | proteasome core complex(GO:0005839) |
0.0 | 0.9 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
0.2 | 0.8 | GO:0005787 | signal peptidase complex(GO:0005787) |
0.0 | 0.8 | GO:0032156 | septin ring(GO:0005940) septin complex(GO:0031105) septin cytoskeleton(GO:0032156) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.5 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 1.5 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 1.1 | GO:0004707 | MAP kinase activity(GO:0004707) |
0.1 | 1.0 | GO:0016918 | retinal binding(GO:0016918) |
0.0 | 1.0 | GO:0008376 | acetylgalactosaminyltransferase activity(GO:0008376) |
0.1 | 0.9 | GO:0052629 | phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629) |
0.0 | 0.9 | GO:0004298 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.2 | 0.8 | GO:0001042 | RNA polymerase I core binding(GO:0001042) |
0.0 | 0.8 | GO:0019843 | rRNA binding(GO:0019843) |
0.1 | 0.7 | GO:0019865 | IgE binding(GO:0019863) immunoglobulin binding(GO:0019865) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.6 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 1.0 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.0 | 0.6 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.5 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.0 | 0.4 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.0 | 0.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.0 | 0.3 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.1 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.6 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 1.0 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
0.1 | 0.9 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |
0.0 | 0.9 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.1 | 0.8 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |
0.1 | 0.8 | REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION | Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression |
0.0 | 0.8 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.0 | 0.6 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.0 | 0.6 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
0.0 | 0.6 | REACTOME MITOCHONDRIAL TRNA AMINOACYLATION | Genes involved in Mitochondrial tRNA aminoacylation |