PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000019392 | signal transducer and activator of transcription 5a | |
ENSDARG00000055588 | signal transducer and activator of transcription 5b | |
ENSDARG00000113871 | signal transducer and activator of transcription 5a |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
stat5a | dr11_v1_chr3_+_17314997_17314997 | -0.84 | 5.5e-06 | Click! |
stat5b | dr11_v1_chr12_-_13650344_13650472 | 0.01 | 9.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr13_-_49819027 Show fit | 2.34 |
ENSDART00000067824
|
beta-1,3-N-acetylgalactosaminyltransferase 2 |
|
chr1_+_230363 Show fit | 2.02 |
ENSDART00000153285
|
transcription factor Dp-1, b |
|
chr22_-_26005894 Show fit | 1.94 |
ENSDART00000105088
|
platelet-derived growth factor alpha polypeptide a |
|
chr22_-_26100282 Show fit | 1.87 |
ENSDART00000166075
|
platelet-derived growth factor alpha polypeptide a |
|
chr18_-_49318823 Show fit | 1.70 |
ENSDART00000098419
|
sb:cb81 |
|
chr25_+_31323978 Show fit | 1.67 |
ENSDART00000067030
|
lymphocyte-specific protein 1 |
|
chr6_+_45934682 Show fit | 1.65 |
ENSDART00000103489
|
centromere protein S |
|
chr15_-_23485752 Show fit | 1.65 |
ENSDART00000152706
|
NLR family member X1 |
|
chr3_-_45281350 Show fit | 1.60 |
ENSDART00000020168
|
potassium channel tetramerization domain containing 5a |
|
chr15_+_2857556 Show fit | 1.46 |
ENSDART00000157758
|
MRE11 homolog A, double strand break repair nuclease |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.5 | GO:0046777 | protein autophosphorylation(GO:0046777) |
0.8 | 3.8 | GO:0003261 | cardiac muscle progenitor cell migration to the midline involved in heart field formation(GO:0003261) |
0.1 | 2.3 | GO:0006493 | protein O-linked glycosylation(GO:0006493) |
0.1 | 1.6 | GO:0051382 | kinetochore assembly(GO:0051382) |
0.1 | 1.6 | GO:0043124 | negative regulation of I-kappaB kinase/NF-kappaB signaling(GO:0043124) |
0.0 | 1.6 | GO:0051260 | protein homooligomerization(GO:0051260) |
0.2 | 1.5 | GO:0042138 | meiotic DNA double-strand break formation(GO:0042138) |
0.3 | 1.3 | GO:0018343 | protein farnesylation(GO:0018343) |
0.2 | 1.2 | GO:0040016 | embryonic cleavage(GO:0040016) |
0.3 | 1.1 | GO:0010825 | positive regulation of centrosome duplication(GO:0010825) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | GO:0043240 | Fanconi anaemia nuclear complex(GO:0043240) |
0.2 | 1.5 | GO:0030870 | Mre11 complex(GO:0030870) |
0.3 | 1.4 | GO:0031511 | Mis6-Sim4 complex(GO:0031511) |
0.0 | 1.4 | GO:0031463 | Cul3-RING ubiquitin ligase complex(GO:0031463) |
0.3 | 1.3 | GO:0005965 | protein farnesyltransferase complex(GO:0005965) |
0.0 | 1.2 | GO:0097610 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.1 | 1.0 | GO:0014704 | intercalated disc(GO:0014704) |
0.1 | 0.9 | GO:0008540 | proteasome regulatory particle, base subcomplex(GO:0008540) |
0.0 | 0.9 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.1 | 0.8 | GO:0036038 | MKS complex(GO:0036038) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 3.8 | GO:0005161 | platelet-derived growth factor receptor binding(GO:0005161) |
0.1 | 2.3 | GO:0008376 | acetylgalactosaminyltransferase activity(GO:0008376) |
0.1 | 1.6 | GO:0097602 | cullin family protein binding(GO:0097602) |
0.2 | 1.5 | GO:0000014 | single-stranded DNA endodeoxyribonuclease activity(GO:0000014) |
0.3 | 1.3 | GO:0004660 | protein farnesyltransferase activity(GO:0004660) |
0.0 | 1.3 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.0 | 1.1 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
0.0 | 1.1 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 1.0 | GO:0045296 | cadherin binding(GO:0045296) |
0.1 | 0.9 | GO:0016274 | arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.0 | 1.5 | PID BARD1 PATHWAY | BARD1 signaling events |
0.0 | 1.2 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.0 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.0 | 0.9 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.5 | PID P53 REGULATION PATHWAY | p53 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.0 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.1 | 1.5 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.1 | 1.4 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.0 | 1.3 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.1 | 1.2 | REACTOME KINESINS | Genes involved in Kinesins |
0.0 | 1.0 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.0 | 0.8 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
0.1 | 0.6 | REACTOME REGULATION OF THE FANCONI ANEMIA PATHWAY | Genes involved in Regulation of the Fanconi anemia pathway |
0.0 | 0.6 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.0 | 0.3 | REACTOME RECEPTOR LIGAND BINDING INITIATES THE SECOND PROTEOLYTIC CLEAVAGE OF NOTCH RECEPTOR | Genes involved in Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor |