PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tal1 | dr11_v1_chr22_+_16535575_16535575 | 0.86 | 1.8e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_-_306533 Show fit | 1.81 |
ENSDART00000173437
|
POC1 centriolar protein A |
|
chr1_-_59571758 Show fit | 1.80 |
ENSDART00000193546
ENSDART00000167087 |
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 |
|
chr21_-_217589 Show fit | 1.80 |
ENSDART00000185017
|
|
|
chr21_-_23331619 Show fit | 1.67 |
ENSDART00000007806
|
zinc finger and BTB domain containing 16a |
|
chr8_-_1051438 Show fit | 1.50 |
ENSDART00000067093
ENSDART00000170737 |
SET and MYND domain containing 1b |
|
chr7_+_44715224 Show fit | 1.47 |
ENSDART00000184630
|
si:dkey-56m19.5 |
|
chr22_-_10541372 Show fit | 1.45 |
ENSDART00000179708
|
si:dkey-42i9.4 |
|
chr25_-_36261836 Show fit | 1.44 |
ENSDART00000179411
|
dihydrouridine synthase 2 |
|
chr25_-_36369057 Show fit | 1.42 |
ENSDART00000064400
|
si:ch211-113a14.24 |
|
chr15_-_4485828 Show fit | 1.41 |
ENSDART00000062868
|
transcription factor Dp-2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.1 | GO:0016584 | nucleosome positioning(GO:0016584) |
0.2 | 2.9 | GO:0007339 | binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344) |
0.0 | 2.9 | GO:0045930 | negative regulation of mitotic cell cycle(GO:0045930) |
0.2 | 2.2 | GO:0019372 | lipoxygenase pathway(GO:0019372) linoleic acid metabolic process(GO:0043651) hepoxilin metabolic process(GO:0051121) hepoxilin biosynthetic process(GO:0051122) |
0.1 | 1.7 | GO:0032481 | positive regulation of type I interferon production(GO:0032481) |
0.1 | 1.6 | GO:0048251 | elastic fiber assembly(GO:0048251) |
0.0 | 1.6 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.1 | 1.5 | GO:0030240 | skeletal muscle thin filament assembly(GO:0030240) |
0.0 | 1.5 | GO:0070121 | Kupffer's vesicle development(GO:0070121) |
0.0 | 1.4 | GO:0006400 | tRNA modification(GO:0006400) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.8 | GO:0000786 | nucleosome(GO:0000786) |
0.0 | 2.4 | GO:0000785 | chromatin(GO:0000785) |
0.0 | 1.8 | GO:0044853 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.0 | 1.6 | GO:0016592 | mediator complex(GO:0016592) |
0.1 | 1.5 | GO:0031430 | M band(GO:0031430) |
0.0 | 1.5 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.0 | 1.2 | GO:0016607 | nuclear speck(GO:0016607) |
0.1 | 1.1 | GO:0016282 | eukaryotic 43S preinitiation complex(GO:0016282) |
0.0 | 1.1 | GO:0001725 | stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517) |
0.0 | 1.1 | GO:0005871 | kinesin complex(GO:0005871) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.8 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
0.3 | 2.9 | GO:0035804 | structural constituent of egg coat(GO:0035804) |
0.1 | 2.6 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
0.0 | 2.0 | GO:0008134 | transcription factor binding(GO:0008134) |
0.1 | 1.9 | GO:0042800 | histone methyltransferase activity (H3-K4 specific)(GO:0042800) |
0.0 | 1.9 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.1 | 1.8 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
0.0 | 1.8 | GO:0003743 | translation initiation factor activity(GO:0003743) |
0.0 | 1.8 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
0.3 | 1.5 | GO:0017150 | tRNA dihydrouridine synthase activity(GO:0017150) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.8 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 2.2 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 2.1 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.0 | 0.8 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 0.8 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 0.7 | ST INTERLEUKIN 4 PATHWAY | Interleukin 4 (IL-4) Pathway |
0.0 | 0.7 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.7 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 0.6 | ST GA12 PATHWAY | G alpha 12 Pathway |
0.0 | 0.6 | PID ATM PATHWAY | ATM pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.4 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.1 | 1.9 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.0 | 1.6 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
0.0 | 1.2 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.0 | 1.1 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.0 | 1.0 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.0 | 1.0 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.0 | 0.9 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.1 | 0.8 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |
0.0 | 0.8 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |