PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tbp | dr11_v1_chr13_-_24396199_24396199 | -0.74 | 3.0e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22240052 Show fit | 56.19 |
ENSDART00000111109
|
crystallin, gamma M2d9 |
|
chr9_-_22232902 Show fit | 52.07 |
ENSDART00000101845
|
crystallin, gamma M2d5 |
|
chr6_+_41181869 Show fit | 46.66 |
ENSDART00000002046
|
opsin 1 (cone pigments), medium-wave-sensitive, 1 |
|
chr9_-_22245572 Show fit | 44.25 |
ENSDART00000114943
|
crystallin, gamma M2d4 |
|
chr9_-_22299412 Show fit | 38.32 |
ENSDART00000139101
|
crystallin, gamma M2d21 |
|
chr9_-_22158784 Show fit | 37.47 |
ENSDART00000167850
|
crystallin, gamma M2d14 |
|
chr9_-_22213297 Show fit | 36.43 |
ENSDART00000110656
ENSDART00000133149 |
crystallin, gamma M2d20 |
|
chr9_-_22135576 Show fit | 35.00 |
ENSDART00000101902
|
crystallin, gamma M2d8 |
|
chr16_-_25085327 Show fit | 34.16 |
ENSDART00000077661
|
protease, serine 1 |
|
chr6_-_346084 Show fit | 33.93 |
ENSDART00000162599
|
phosphodiesterase 6H, cGMP-specific, cone, gamma, paralog a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.9 | 651.8 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
2.3 | 111.9 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
8.1 | 48.5 | GO:0045745 | positive regulation of G-protein coupled receptor protein signaling pathway(GO:0045745) |
4.1 | 45.6 | GO:0006032 | chitin catabolic process(GO:0006032) |
0.3 | 38.8 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
0.1 | 37.6 | GO:0006887 | exocytosis(GO:0006887) |
0.7 | 31.5 | GO:0009250 | glycogen biosynthetic process(GO:0005978) glucan biosynthetic process(GO:0009250) |
0.0 | 31.3 | GO:0006508 | proteolysis(GO:0006508) |
7.9 | 23.7 | GO:1905072 | cardiac jelly development(GO:1905072) |
4.7 | 18.8 | GO:0044060 | regulation of endocrine process(GO:0044060) endocrine hormone secretion(GO:0060986) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 155.5 | GO:0005615 | extracellular space(GO:0005615) |
3.3 | 127.2 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.1 | 81.6 | GO:0005576 | extracellular region(GO:0005576) |
0.2 | 63.4 | GO:0005764 | lysosome(GO:0005764) |
0.4 | 50.7 | GO:0016459 | myosin complex(GO:0016459) |
6.9 | 48.5 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
1.7 | 30.8 | GO:0030667 | secretory granule membrane(GO:0030667) |
1.8 | 18.1 | GO:0042583 | chromaffin granule(GO:0042583) |
0.2 | 13.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.5 | 13.2 | GO:0000407 | pre-autophagosomal structure(GO:0000407) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
8.0 | 661.2 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
2.3 | 111.9 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.1 | 76.1 | GO:0005509 | calcium ion binding(GO:0005509) |
0.3 | 70.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.4 | 61.8 | GO:0005179 | hormone activity(GO:0005179) |
0.2 | 55.1 | GO:0003774 | motor activity(GO:0003774) |
3.7 | 48.5 | GO:0047555 | 3',5'-cyclic-GMP phosphodiesterase activity(GO:0047555) |
4.1 | 45.6 | GO:0004568 | chitinase activity(GO:0004568) |
0.2 | 30.5 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.1 | 24.0 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 32.4 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.3 | 14.4 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.5 | 12.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.2 | 10.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.4 | 8.3 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.1 | 5.6 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.1 | 3.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 3.5 | PID P73PATHWAY | p73 transcription factor network |
0.1 | 2.5 | PID SHP2 PATHWAY | SHP2 signaling |
0.0 | 1.2 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.9 | 34.2 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
3.9 | 23.2 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.4 | 18.6 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.8 | 16.0 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
1.0 | 15.8 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
0.7 | 14.2 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
2.2 | 13.3 | REACTOME OPSINS | Genes involved in Opsins |
0.2 | 10.5 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.1 | 9.2 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.7 | 8.5 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |