PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tbx3b | dr11_v1_chr5_+_26913120_26913120 | 0.86 | 2.1e-06 | Click! |
tbx3a | dr11_v1_chr5_-_72324371_72324371 | 0.63 | 4.1e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_-_26532167 Show fit | 3.53 |
ENSDART00000061914
|
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like |
|
chr12_+_27141140 Show fit | 3.40 |
ENSDART00000136415
|
homeobox B1b |
|
chr11_-_23219367 Show fit | 3.03 |
ENSDART00000003646
|
opticin |
|
chr18_+_37272568 Show fit | 2.46 |
ENSDART00000132749
|
transmembrane protein 123 |
|
chr3_+_37790351 Show fit | 2.41 |
ENSDART00000151506
|
si:dkey-260c8.8 |
|
chr19_+_7424347 Show fit | 2.33 |
ENSDART00000004622
|
splicing factor 3b, subunit 4 |
|
chr4_+_15006217 Show fit | 2.00 |
ENSDART00000090837
|
zinc finger, C3HC-type containing 1 |
|
chr4_+_14981854 Show fit | 1.80 |
ENSDART00000067046
|
cation/H+ exchanger protein 1 |
|
chr1_+_25650917 Show fit | 1.72 |
ENSDART00000054235
|
pleiotropic regulator 1 |
|
chr21_+_21611867 Show fit | 1.53 |
ENSDART00000189148
|
B9 domain containing 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.5 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
0.5 | 3.4 | GO:0021570 | rhombomere 4 development(GO:0021570) rhombomere 4 morphogenesis(GO:0021661) |
0.4 | 3.2 | GO:0036372 | opsin transport(GO:0036372) |
0.6 | 2.8 | GO:0070986 | left/right axis specification(GO:0070986) |
0.1 | 2.3 | GO:0048026 | positive regulation of mRNA splicing, via spliceosome(GO:0048026) |
0.4 | 1.7 | GO:0043518 | negative regulation of DNA damage response, signal transduction by p53 class mediator(GO:0043518) |
0.0 | 1.6 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
0.4 | 1.4 | GO:0018343 | protein farnesylation(GO:0018343) |
0.2 | 1.4 | GO:0006283 | transcription-coupled nucleotide-excision repair(GO:0006283) |
0.4 | 1.3 | GO:0080120 | CAAX-box protein processing(GO:0071586) CAAX-box protein maturation(GO:0080120) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.5 | GO:0036038 | MKS complex(GO:0036038) |
0.0 | 2.5 | GO:0010008 | endosome membrane(GO:0010008) |
0.1 | 2.3 | GO:0005689 | U12-type spliceosomal complex(GO:0005689) |
0.0 | 2.0 | GO:0005762 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.2 | 1.7 | GO:0000974 | Prp19 complex(GO:0000974) |
0.1 | 1.6 | GO:0048188 | Set1C/COMPASS complex(GO:0048188) |
0.0 | 1.5 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.5 | 1.4 | GO:0005953 | CAAX-protein geranylgeranyltransferase complex(GO:0005953) |
0.1 | 1.4 | GO:0005665 | DNA-directed RNA polymerase II, core complex(GO:0005665) |
0.0 | 1.4 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 3.5 | GO:0004329 | formate-tetrahydrofolate ligase activity(GO:0004329) |
0.2 | 2.5 | GO:0043015 | gamma-tubulin binding(GO:0043015) |
0.0 | 2.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.5 | 1.8 | GO:0015369 | calcium:proton antiporter activity(GO:0015369) metal ion:proton antiporter activity(GO:0051139) |
0.0 | 1.6 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
0.5 | 1.4 | GO:0004662 | CAAX-protein geranylgeranyltransferase activity(GO:0004662) |
0.1 | 1.4 | GO:0015299 | solute:proton antiporter activity(GO:0015299) |
0.1 | 1.4 | GO:0003899 | DNA-directed RNA polymerase activity(GO:0003899) RNA polymerase activity(GO:0034062) |
0.1 | 1.3 | GO:0051011 | microtubule minus-end binding(GO:0051011) |
0.1 | 1.3 | GO:0033613 | activating transcription factor binding(GO:0033613) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.0 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 1.3 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.0 | 1.1 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 0.7 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 0.3 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 2.3 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 1.5 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.1 | 1.4 | REACTOME VIRAL MESSENGER RNA SYNTHESIS | Genes involved in Viral Messenger RNA Synthesis |
0.1 | 1.4 | REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS | Genes involved in Apoptotic cleavage of cellular proteins |
0.0 | 1.4 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.1 | 1.3 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
0.0 | 1.3 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.1 | 0.6 | REACTOME THE NLRP3 INFLAMMASOME | Genes involved in The NLRP3 inflammasome |
0.0 | 0.6 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |