PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tbx5a | dr11_v1_chr5_-_72289648_72289648 | 0.78 | 7.8e-05 | Click! |
tbx5b | dr11_v1_chr5_+_23151169_23151169 | 0.65 | 2.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_-_293036 Show fit | 1.51 |
ENSDART00000171629
|
si:ch73-40a17.3 |
|
chr5_+_26075230 Show fit | 1.38 |
ENSDART00000098473
|
Kruppel-like factor 9 |
|
chr21_+_25226558 Show fit | 1.32 |
ENSDART00000168480
|
syncollin, tandem duplicate 2 |
|
chr7_-_38638809 Show fit | 1.16 |
ENSDART00000144341
|
six-cysteine containing astacin protease 4 |
|
chr23_-_30785382 Show fit | 0.99 |
ENSDART00000136156
ENSDART00000131285 |
myelin transcription factor 1a |
|
chr10_-_2522588 Show fit | 0.86 |
ENSDART00000081926
|
|
|
chr12_-_20362041 Show fit | 0.83 |
ENSDART00000184145
ENSDART00000105952 |
aquaporin 8a, tandem duplicate 2 |
|
chr18_+_15841449 Show fit | 0.81 |
ENSDART00000141800
ENSDART00000091349 |
early endosome antigen 1 |
|
chr13_+_47821524 Show fit | 0.81 |
ENSDART00000109978
|
zinc finger CCCH-type containing 6 |
|
chr7_+_73780936 Show fit | 0.81 |
ENSDART00000092691
|
proliferation and apoptosis adaptor protein 15 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | GO:0043249 | erythrocyte maturation(GO:0043249) |
0.0 | 1.2 | GO:0017144 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.1 | 0.9 | GO:0048312 | intracellular distribution of mitochondria(GO:0048312) |
0.2 | 0.8 | GO:2000392 | lamellipodium morphogenesis(GO:0072673) regulation of lamellipodium morphogenesis(GO:2000392) |
0.1 | 0.8 | GO:1900407 | regulation of cellular response to oxidative stress(GO:1900407) |
0.1 | 0.8 | GO:0035677 | posterior lateral line neuromast hair cell development(GO:0035677) |
0.1 | 0.8 | GO:0043567 | regulation of insulin-like growth factor receptor signaling pathway(GO:0043567) |
0.2 | 0.7 | GO:1902001 | regulation of plasma membrane long-chain fatty acid transport(GO:0010746) positive regulation of plasma membrane long-chain fatty acid transport(GO:0010747) plasma membrane long-chain fatty acid transport(GO:0015911) fatty acid transmembrane transport(GO:1902001) positive regulation of anion transmembrane transport(GO:1903961) regulation of fatty acid transport(GO:2000191) positive regulation of fatty acid transport(GO:2000193) |
0.2 | 0.7 | GO:0097113 | AMPA glutamate receptor clustering(GO:0097113) glutamate receptor clustering(GO:0097688) |
0.0 | 0.7 | GO:0006829 | zinc II ion transport(GO:0006829) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | GO:0030667 | secretory granule membrane(GO:0030667) |
0.0 | 1.0 | GO:0005776 | autophagosome(GO:0005776) |
0.1 | 0.9 | GO:0044295 | axonal growth cone(GO:0044295) |
0.2 | 0.8 | GO:0032433 | filopodium tip(GO:0032433) |
0.1 | 0.8 | GO:0044224 | juxtaparanode region of axon(GO:0044224) |
0.1 | 0.7 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.0 | 0.7 | GO:0031594 | neuromuscular junction(GO:0031594) |
0.1 | 0.6 | GO:0030428 | cell septum(GO:0030428) |
0.1 | 0.5 | GO:0031907 | peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907) |
0.1 | 0.5 | GO:0070062 | extracellular exosome(GO:0070062) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.8 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.0 | 1.5 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 0.9 | GO:0003678 | DNA helicase activity(GO:0003678) |
0.1 | 0.8 | GO:0015250 | water channel activity(GO:0015250) |
0.1 | 0.8 | GO:0031994 | insulin-like growth factor I binding(GO:0031994) insulin-like growth factor II binding(GO:0031995) |
0.0 | 0.8 | GO:0030552 | cAMP binding(GO:0030552) |
0.0 | 0.8 | GO:0031624 | ubiquitin conjugating enzyme binding(GO:0031624) |
0.0 | 0.8 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
0.0 | 0.8 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
0.1 | 0.7 | GO:0047676 | arachidonate-CoA ligase activity(GO:0047676) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
0.0 | 0.5 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 0.4 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.4 | PID THROMBIN PAR1 PATHWAY | PAR1-mediated thrombin signaling events |
0.0 | 0.4 | SIG IL4RECEPTOR IN B LYPHOCYTES | Genes related to IL4 rceptor signaling in B lymphocytes |
0.0 | 0.4 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 0.4 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.0 | 0.3 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 0.2 | PID LYSOPHOSPHOLIPID PATHWAY | LPA receptor mediated events |
0.0 | 0.2 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
0.1 | 0.7 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.1 | 0.5 | REACTOME RAP1 SIGNALLING | Genes involved in Rap1 signalling |
0.0 | 0.5 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |
0.0 | 0.5 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 0.4 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.1 | 0.4 | REACTOME SEROTONIN RECEPTORS | Genes involved in Serotonin receptors |
0.0 | 0.4 | REACTOME HIGHLY CALCIUM PERMEABLE POSTSYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Highly calcium permeable postsynaptic nicotinic acetylcholine receptors |
0.0 | 0.4 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
0.0 | 0.4 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |