PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tcf12 | dr11_v1_chr7_-_52709759_52709935 | 0.60 | 6.4e-03 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.4 | GO:0045773 | positive regulation of axon extension(GO:0045773) |
0.1 | 6.2 | GO:0032273 | positive regulation of protein polymerization(GO:0032273) |
0.1 | 6.1 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.1 | 6.0 | GO:0031532 | actin cytoskeleton reorganization(GO:0031532) |
1.0 | 5.2 | GO:0046677 | response to antibiotic(GO:0046677) |
0.3 | 5.1 | GO:0035235 | ionotropic glutamate receptor signaling pathway(GO:0035235) |
0.1 | 5.0 | GO:0018107 | peptidyl-threonine phosphorylation(GO:0018107) |
0.0 | 4.8 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.0 | 4.6 | GO:0030705 | cytoskeleton-dependent intracellular transport(GO:0030705) |
0.2 | 4.5 | GO:0006942 | regulation of striated muscle contraction(GO:0006942) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.8 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.1 | 6.8 | GO:0034703 | cation channel complex(GO:0034703) |
0.1 | 6.6 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.2 | 5.5 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 5.5 | GO:0016459 | myosin complex(GO:0016459) |
0.3 | 5.1 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.1 | 5.0 | GO:0005861 | troponin complex(GO:0005861) |
0.2 | 4.9 | GO:0043195 | terminal bouton(GO:0043195) |
0.1 | 4.5 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.1 | 4.5 | GO:0032432 | actin filament bundle(GO:0032432) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 12.5 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.1 | 12.4 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.0 | 10.5 | GO:0051015 | actin filament binding(GO:0051015) |
0.0 | 7.3 | GO:0003924 | GTPase activity(GO:0003924) |
0.2 | 5.5 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.2 | 5.5 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.4 | 5.3 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.6 | 5.1 | GO:0004985 | opioid receptor activity(GO:0004985) |
0.3 | 5.1 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
0.1 | 5.1 | GO:0030898 | actin-dependent ATPase activity(GO:0030898) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.9 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.3 | 4.7 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.2 | 3.2 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 2.2 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.1 | 2.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 2.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 1.9 | PID REELIN PATHWAY | Reelin signaling pathway |
0.0 | 1.8 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.0 | 1.6 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.1 | 1.5 | PID NFKAPPAB ATYPICAL PATHWAY | Atypical NF-kappaB pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.4 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.2 | 4.3 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.1 | 4.0 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 3.5 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.1 | 3.0 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.2 | 2.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.1 | 2.4 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 2.3 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.1 | 2.2 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.1 | 2.1 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |