PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tcf21 | dr11_v1_chr23_-_31555696_31555696 | 0.28 | 2.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_+_13256415 Show fit | 4.31 |
ENSDART00000144542
|
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like |
|
chr9_-_22122590 Show fit | 4.25 |
ENSDART00000108748
ENSDART00000174614 |
crystallin, gamma M2d9 |
|
chr8_-_25247284 Show fit | 4.03 |
ENSDART00000132697
|
guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 |
|
chr19_+_9174166 Show fit | 3.32 |
ENSDART00000104637
ENSDART00000150968 |
si:ch211-81a5.8 |
|
chr21_+_39185761 Show fit | 3.24 |
ENSDART00000075992
ENSDART00000140644 |
crystallin, beta A1b |
|
chr21_+_39185461 Show fit | 2.92 |
ENSDART00000178419
|
crystallin, beta A1b |
|
chr15_+_20403084 Show fit | 2.77 |
ENSDART00000141388
ENSDART00000152734 |
cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) |
|
chr10_+_21576909 Show fit | 2.44 |
ENSDART00000168604
ENSDART00000166533 |
protocadherin 1 alpha 3 |
|
chr9_+_13714379 Show fit | 2.38 |
ENSDART00000017593
ENSDART00000145503 |
transmembrane protein 237a |
|
chr6_+_13742899 Show fit | 2.37 |
ENSDART00000104722
|
cyclin-dependent kinase 5, regulatory subunit 2a (p39) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 9.6 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 8.1 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.0 | 4.2 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
0.4 | 4.0 | GO:0050907 | detection of chemical stimulus involved in sensory perception(GO:0050907) |
0.1 | 3.3 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
0.1 | 2.9 | GO:0007274 | neuromuscular synaptic transmission(GO:0007274) |
0.5 | 2.8 | GO:0097250 | mitochondrial respiratory chain supercomplex assembly(GO:0097250) |
0.0 | 2.7 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) |
0.0 | 2.5 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.1 | 2.4 | GO:0060059 | embryonic retina morphogenesis in camera-type eye(GO:0060059) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.3 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.2 | 4.0 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.0 | 3.4 | GO:0005884 | actin filament(GO:0005884) |
0.1 | 3.3 | GO:0043195 | terminal bouton(GO:0043195) |
0.0 | 2.8 | GO:0005746 | mitochondrial respiratory chain(GO:0005746) |
0.0 | 2.6 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.5 | 2.4 | GO:0016533 | cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533) |
0.0 | 2.1 | GO:0043025 | neuronal cell body(GO:0043025) |
0.2 | 1.9 | GO:0045095 | keratin filament(GO:0045095) |
0.0 | 1.8 | GO:0005902 | microvillus(GO:0005902) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.0 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 5.7 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.1 | 4.8 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.3 | 4.3 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
0.1 | 3.5 | GO:0031683 | G-protein beta/gamma-subunit complex binding(GO:0031683) |
0.0 | 3.5 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.0 | 3.3 | GO:0019905 | syntaxin binding(GO:0019905) |
0.1 | 2.8 | GO:0004129 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.0 | 2.6 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.0 | 2.5 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.0 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.1 | 2.0 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 1.6 | PID FCER1 PATHWAY | Fc-epsilon receptor I signaling in mast cells |
0.1 | 1.0 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.0 | 0.9 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 0.8 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.0 | 0.7 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 0.6 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
0.1 | 0.6 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.0 | 0.3 | PID NFKAPPAB ATYPICAL PATHWAY | Atypical NF-kappaB pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.7 | 2.0 | REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION | Genes involved in Unblocking of NMDA receptor, glutamate binding and activation |
0.4 | 1.7 | REACTOME ACYL CHAIN REMODELLING OF PI | Genes involved in Acyl chain remodelling of PI |
0.1 | 1.5 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.1 | 1.3 | REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION | Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression |
0.0 | 1.3 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
0.3 | 1.0 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.0 | 1.0 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.3 | 0.9 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.0 | 0.9 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |