PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tcf3b | dr11_v1_chr22_-_20342260_20342260 | 0.74 | 2.9e-04 | Click! |
tcf3a | dr11_v1_chr2_-_57378748_57378748 | 0.30 | 2.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_29962345 Show fit | 3.40 |
ENSDART00000136819
|
branched chain amino-acid transaminase 2, mitochondrial |
|
chr5_-_14521500 Show fit | 2.92 |
ENSDART00000176565
|
si:ch211-244o22.2 |
|
chr19_+_15440841 Show fit | 2.58 |
ENSDART00000182329
|
lin-28 homolog A (C. elegans) |
|
chr19_+_15441022 Show fit | 2.57 |
ENSDART00000098970
ENSDART00000140276 |
lin-28 homolog A (C. elegans) |
|
chr22_-_10541372 Show fit | 2.38 |
ENSDART00000179708
|
si:dkey-42i9.4 |
|
chr5_+_46424437 Show fit | 2.22 |
ENSDART00000186511
|
versican a |
|
chr14_-_30390145 Show fit | 1.99 |
ENSDART00000045423
|
solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 |
|
chr7_+_2455344 Show fit | 1.89 |
ENSDART00000172942
|
si:dkey-125e8.4 |
|
chr24_-_9300160 Show fit | 1.89 |
ENSDART00000152378
|
TGFB-induced factor homeobox 1 |
|
chr21_-_19919020 Show fit | 1.84 |
ENSDART00000147396
|
protein phosphatase 1, regulatory subunit 3B |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.6 | GO:0045930 | negative regulation of mitotic cell cycle(GO:0045930) |
0.9 | 3.4 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
0.1 | 3.3 | GO:0061386 | closure of optic fissure(GO:0061386) |
0.2 | 3.1 | GO:0021754 | facial nucleus development(GO:0021754) |
0.2 | 3.0 | GO:0030241 | skeletal muscle myosin thick filament assembly(GO:0030241) |
0.2 | 2.9 | GO:0035306 | positive regulation of dephosphorylation(GO:0035306) positive regulation of protein dephosphorylation(GO:0035307) |
0.3 | 2.8 | GO:0021797 | forebrain anterior/posterior pattern specification(GO:0021797) |
0.1 | 2.7 | GO:2000826 | regulation of heart morphogenesis(GO:2000826) |
0.2 | 2.6 | GO:0000002 | mitochondrial genome maintenance(GO:0000002) |
0.2 | 2.4 | GO:0051231 | mitotic spindle elongation(GO:0000022) spindle elongation(GO:0051231) mitotic spindle midzone assembly(GO:0051256) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 75.4 | GO:0005634 | nucleus(GO:0005634) |
0.0 | 5.8 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 4.2 | GO:0005604 | basement membrane(GO:0005604) |
0.0 | 4.0 | GO:0000785 | chromatin(GO:0000785) |
0.0 | 3.4 | GO:0000776 | kinetochore(GO:0000776) |
0.0 | 3.3 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.0 | 3.0 | GO:0043296 | apical junction complex(GO:0043296) |
0.1 | 2.8 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.0 | 2.7 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.1 | 2.6 | GO:0005657 | replication fork(GO:0005657) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 34.8 | GO:0000987 | core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
0.0 | 14.0 | GO:0003677 | DNA binding(GO:0003677) |
0.1 | 4.6 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
0.0 | 4.2 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.0 | 3.9 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.9 | 3.4 | GO:0004084 | branched-chain-amino-acid transaminase activity(GO:0004084) L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656) |
0.0 | 2.9 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.0 | 2.8 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.5 | 2.6 | GO:0043139 | 5'-3' DNA helicase activity(GO:0043139) |
0.2 | 2.6 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.4 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 2.8 | PID ALK1 PATHWAY | ALK1 signaling events |
0.1 | 2.7 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 2.7 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.1 | 2.5 | ST B CELL ANTIGEN RECEPTOR | B Cell Antigen Receptor |
0.1 | 1.8 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.1 | 1.8 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.1 | 1.6 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.1 | 1.6 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.1 | 1.6 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.3 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
0.2 | 4.0 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.1 | 2.8 | REACTOME APC C CDH1 MEDIATED DEGRADATION OF CDC20 AND OTHER APC C CDH1 TARGETED PROTEINS IN LATE MITOSIS EARLY G1 | Genes involved in APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 |
0.1 | 2.6 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.0 | 2.2 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
0.1 | 2.1 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.1 | 1.9 | REACTOME RNA POL III TRANSCRIPTION INITIATION FROM TYPE 2 PROMOTER | Genes involved in RNA Polymerase III Transcription Initiation From Type 2 Promoter |
0.0 | 1.9 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.1 | 1.8 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.3 | 1.7 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |