PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tcf7 | dr11_v1_chr21_+_45268112_45268112 | -0.48 | 3.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_35075847 Show fit | 3.22 |
ENSDART00000193469
ENSDART00000037346 |
chymotrypsinogen B1 |
|
chr19_+_40856534 Show fit | 2.00 |
ENSDART00000051950
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 |
|
chr20_+_46040666 Show fit | 1.98 |
ENSDART00000060744
|
si:dkey-7c18.24 |
|
chr9_-_22232902 Show fit | 1.85 |
ENSDART00000101845
|
crystallin, gamma M2d5 |
|
chr6_-_35487413 Show fit | 1.70 |
ENSDART00000102461
|
regulator of G protein signaling 8 |
|
chr15_+_6109861 Show fit | 1.50 |
ENSDART00000185154
|
Purkinje cell protein 4 |
|
chr20_+_30445971 Show fit | 1.50 |
ENSDART00000153150
|
myelin transcription factor 1-like, a |
|
chr2_-_22152797 Show fit | 1.32 |
ENSDART00000145188
|
cytochrome P450, family 7, subfamily A, polypeptide 1 |
|
chr15_-_12545683 Show fit | 1.24 |
ENSDART00000162807
|
sodium channel, voltage-gated, type II, beta |
|
chr13_+_27073901 Show fit | 1.20 |
ENSDART00000146227
|
solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.0 | 3.1 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.5 | 2.0 | GO:0060159 | regulation of dopamine receptor signaling pathway(GO:0060159) |
0.0 | 1.6 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.2 | 1.3 | GO:0008206 | bile acid biosynthetic process(GO:0006699) bile acid metabolic process(GO:0008206) |
0.2 | 1.2 | GO:1900029 | positive regulation of ruffle assembly(GO:1900029) |
0.3 | 1.0 | GO:0046333 | octopamine biosynthetic process(GO:0006589) dopamine catabolic process(GO:0042420) norepinephrine biosynthetic process(GO:0042421) octopamine metabolic process(GO:0046333) |
0.0 | 1.0 | GO:0070831 | basement membrane assembly(GO:0070831) |
0.0 | 1.0 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
0.1 | 0.9 | GO:0006735 | glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | GO:0044298 | neuronal cell body membrane(GO:0032809) cell body membrane(GO:0044298) |
0.1 | 1.6 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.0 | 1.3 | GO:0032587 | ruffle membrane(GO:0032587) |
0.1 | 1.2 | GO:0034706 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.0 | 1.0 | GO:0043256 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
0.0 | 1.0 | GO:0030667 | secretory granule membrane(GO:0030667) |
0.1 | 0.9 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
0.0 | 0.8 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 0.6 | GO:0000176 | nuclear exosome (RNase complex)(GO:0000176) |
0.0 | 0.6 | GO:0043204 | perikaryon(GO:0043204) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 3.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 1.6 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.1 | 1.5 | GO:0017080 | sodium channel regulator activity(GO:0017080) |
0.1 | 1.2 | GO:0008273 | calcium, potassium:sodium antiporter activity(GO:0008273) |
0.0 | 1.2 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
0.0 | 1.1 | GO:0005254 | chloride channel activity(GO:0005254) |
0.3 | 1.0 | GO:0004500 | dopamine beta-monooxygenase activity(GO:0004500) |
0.0 | 1.0 | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity(GO:0004198) |
0.0 | 1.0 | GO:0015179 | L-amino acid transmembrane transporter activity(GO:0015179) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.0 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 0.6 | ST PHOSPHOINOSITIDE 3 KINASE PATHWAY | PI3K Pathway |
0.1 | 0.5 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.0 | 0.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.4 | PID EPO PATHWAY | EPO signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 3.2 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.5 | 2.0 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.0 | 1.6 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.2 | 1.3 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
0.1 | 1.2 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.0 | 1.2 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.0 | 1.0 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.1 | 0.6 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |
0.0 | 0.6 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 0.5 | REACTOME REGULATION OF WATER BALANCE BY RENAL AQUAPORINS | Genes involved in Regulation of Water Balance by Renal Aquaporins |