PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tcf7l2 | dr11_v1_chr12_-_31103187_31103316 | 0.89 | 3.2e-07 | Click! |
tcf7l1a | dr11_v1_chr10_-_42297889_42297889 | -0.86 | 2.4e-06 | Click! |
tcf7l1b | dr11_v1_chr8_-_52143109_52143109 | -0.51 | 2.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_+_6109861 Show fit | 6.69 |
ENSDART00000185154
|
Purkinje cell protein 4 |
|
chr16_+_52512025 Show fit | 5.46 |
ENSDART00000056095
|
fatty acid binding protein 10a, liver basic |
|
chr7_+_39446247 Show fit | 5.14 |
ENSDART00000033610
ENSDART00000099015 |
troponin T type 3b (skeletal, fast) |
|
chr13_+_3252950 Show fit | 4.70 |
ENSDART00000020671
|
peripherin 2b (retinal degeneration, slow) |
|
chr12_+_5129245 Show fit | 4.50 |
ENSDART00000169073
|
phosphodiesterase 6C, cGMP-specific, cone, alpha prime |
|
chr17_-_20897407 Show fit | 4.19 |
ENSDART00000149481
|
ankyrin 3b |
|
chr25_-_30429607 Show fit | 4.07 |
ENSDART00000162429
ENSDART00000176535 |
si:ch211-93f2.1 |
|
chr22_-_282498 Show fit | 3.93 |
ENSDART00000182766
|
|
|
chr20_+_35484070 Show fit | 3.92 |
ENSDART00000026234
ENSDART00000141675 |
meprin A, alpha (PABA peptide hydrolase), tandem duplicate 2 |
|
chr25_+_14092871 Show fit | 3.81 |
ENSDART00000067239
|
guanylate cyclase activator 1g |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.2 | GO:0034765 | regulation of ion transmembrane transport(GO:0034765) |
0.0 | 5.2 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.2 | 5.1 | GO:0006942 | regulation of striated muscle contraction(GO:0006942) |
0.3 | 5.0 | GO:0006570 | tyrosine metabolic process(GO:0006570) |
0.1 | 4.8 | GO:0042461 | photoreceptor cell development(GO:0042461) |
0.0 | 4.7 | GO:0007601 | visual perception(GO:0007601) |
0.1 | 4.5 | GO:0045494 | photoreceptor cell maintenance(GO:0045494) |
0.1 | 3.9 | GO:0061512 | protein localization to cilium(GO:0061512) |
0.1 | 3.9 | GO:0045766 | positive regulation of angiogenesis(GO:0045766) |
0.1 | 3.4 | GO:0030901 | midbrain development(GO:0030901) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.2 | GO:0016459 | myosin complex(GO:0016459) |
0.2 | 6.8 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 6.6 | GO:0043025 | neuronal cell body(GO:0043025) |
0.0 | 3.9 | GO:0005929 | cilium(GO:0005929) |
0.2 | 3.6 | GO:0034706 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.2 | 3.2 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.1 | 3.1 | GO:0032587 | ruffle membrane(GO:0032587) |
0.1 | 3.0 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 2.7 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
0.6 | 2.6 | GO:0071664 | catenin-TCF7L2 complex(GO:0071664) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.5 | GO:0003774 | motor activity(GO:0003774) |
0.2 | 6.6 | GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity(GO:0004114) |
0.1 | 5.8 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.9 | 5.5 | GO:0032052 | bile acid binding(GO:0032052) |
0.5 | 5.1 | GO:0030172 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
0.1 | 4.4 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.0 | 4.3 | GO:0005179 | hormone activity(GO:0005179) |
0.5 | 3.8 | GO:0008048 | calcium sensitive guanylate cyclase activator activity(GO:0008048) |
0.1 | 3.6 | GO:0017080 | sodium channel regulator activity(GO:0017080) |
0.0 | 3.6 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.5 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.1 | 3.1 | ST G ALPHA I PATHWAY | G alpha i Pathway |
0.0 | 0.9 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 0.9 | PID FOXO PATHWAY | FoxO family signaling |
0.0 | 0.8 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 0.6 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.0 | 0.5 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.5 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
0.0 | 0.5 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.0 | 0.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.1 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.1 | 4.1 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.2 | 3.4 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 3.2 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.1 | 2.1 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.1 | 1.9 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.1 | 1.9 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 1.8 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.0 | 1.6 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.2 | 1.4 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |