PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tfap4 | dr11_v1_chr3_-_12227359_12227359 | 0.08 | 7.5e-01 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.1 | 6.3 | GO:0032060 | bleb assembly(GO:0032060) slow muscle cell migration(GO:1904969) |
0.5 | 6.0 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.4 | 4.5 | GO:0045453 | bone resorption(GO:0045453) |
0.0 | 3.9 | GO:0050768 | negative regulation of neurogenesis(GO:0050768) |
1.3 | 3.8 | GO:0098528 | skeletal muscle fiber differentiation(GO:0098528) |
0.4 | 3.8 | GO:0000056 | ribosomal small subunit export from nucleus(GO:0000056) |
0.9 | 3.4 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
0.1 | 3.2 | GO:0043049 | otic placode formation(GO:0043049) |
0.1 | 2.9 | GO:0045746 | negative regulation of Notch signaling pathway(GO:0045746) |
0.2 | 2.6 | GO:0000002 | mitochondrial genome maintenance(GO:0000002) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.2 | GO:0031672 | A band(GO:0031672) |
0.0 | 5.7 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
0.0 | 4.2 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 3.9 | GO:0032993 | protein-DNA complex(GO:0032993) |
0.0 | 3.6 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.0 | 2.7 | GO:0005604 | basement membrane(GO:0005604) |
0.1 | 2.6 | GO:0005657 | replication fork(GO:0005657) |
0.1 | 2.5 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 2.5 | GO:0005643 | nuclear pore(GO:0005643) |
0.1 | 2.3 | GO:0016282 | eukaryotic 43S preinitiation complex(GO:0016282) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 18.4 | GO:0000987 | core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
0.2 | 6.6 | GO:0051018 | protein kinase A binding(GO:0051018) |
0.9 | 6.0 | GO:0061731 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.5 | 5.4 | GO:0005049 | nuclear export signal receptor activity(GO:0005049) |
0.4 | 5.3 | GO:0051879 | Hsp90 protein binding(GO:0051879) |
0.6 | 4.5 | GO:0003993 | acid phosphatase activity(GO:0003993) |
0.1 | 3.8 | GO:0004707 | MAP kinase activity(GO:0004707) |
0.9 | 3.4 | GO:0052656 | branched-chain-amino-acid transaminase activity(GO:0004084) L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656) |
0.0 | 3.4 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.0 | 3.0 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.6 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 4.9 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 2.6 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 2.0 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 1.8 | ST GA13 PATHWAY | G alpha 13 Pathway |
0.1 | 1.8 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 1.7 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 1.7 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.0 | 1.7 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.1 | 1.6 | SA TRKA RECEPTOR | The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.7 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.3 | 3.7 | REACTOME INHIBITION OF REPLICATION INITIATION OF DAMAGED DNA BY RB1 E2F1 | Genes involved in Inhibition of replication initiation of damaged DNA by RB1/E2F1 |
0.2 | 3.4 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.1 | 3.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.1 | 2.7 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
0.1 | 2.4 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.0 | 1.9 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.0 | 1.7 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.2 | 1.6 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.1 | 1.6 | REACTOME SOS MEDIATED SIGNALLING | Genes involved in SOS-mediated signalling |