PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tfcp2 | dr11_v1_chr23_-_33679579_33679579 | 0.74 | 2.6e-04 | Click! |
tfcp2l1 | dr11_v1_chr9_+_38292947_38292947 | -0.70 | 8.7e-04 | Click! |
ubp1 | dr11_v1_chr19_+_42806812_42806814 | -0.66 | 2.2e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr22_+_18349794 Show fit | 7.66 |
ENSDART00000186580
|
GATA zinc finger domain containing 2Ab |
|
chr17_+_51743908 Show fit | 7.07 |
ENSDART00000149039
ENSDART00000148869 |
ornithine decarboxylase 1 |
|
chr8_-_13541514 Show fit | 6.38 |
ENSDART00000063834
|
zgc:86586 |
|
chr11_-_308838 Show fit | 6.01 |
ENSDART00000112538
|
POC1 centriolar protein A |
|
chr16_+_51180938 Show fit | 5.52 |
ENSDART00000169022
|
high mobility group nucleosomal binding domain 2 |
|
chr5_-_68795063 Show fit | 5.31 |
ENSDART00000016307
|
hairy-related 1 |
|
chr15_-_5901514 Show fit | 5.26 |
ENSDART00000155252
|
si:ch73-281n10.2 |
|
chr3_-_27647845 Show fit | 5.17 |
ENSDART00000151625
|
si:ch211-157c3.4 |
|
chr16_+_29509133 Show fit | 5.03 |
ENSDART00000112116
|
cathepsin S, ortholog2, tandem duplicate 1 |
|
chr5_-_54712159 Show fit | 4.78 |
ENSDART00000149207
|
cyclin B1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 18.0 | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter(GO:0000122) |
0.0 | 10.3 | GO:0045184 | establishment of protein localization(GO:0045184) |
0.5 | 7.8 | GO:0006490 | oligosaccharide-lipid intermediate biosynthetic process(GO:0006490) |
0.8 | 7.4 | GO:0055011 | atrial cardiac muscle cell differentiation(GO:0055011) |
0.3 | 7.3 | GO:0001757 | somite specification(GO:0001757) |
0.8 | 7.1 | GO:0033387 | putrescine biosynthetic process from ornithine(GO:0033387) |
0.2 | 7.1 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
1.3 | 6.6 | GO:0000741 | karyogamy(GO:0000741) pronuclear fusion(GO:0007344) |
0.7 | 5.7 | GO:0021550 | medulla oblongata development(GO:0021550) dorsal motor nucleus of vagus nerve development(GO:0021744) |
0.0 | 5.7 | GO:0009952 | anterior/posterior pattern specification(GO:0009952) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 15.3 | GO:0000785 | chromatin(GO:0000785) |
0.0 | 13.6 | GO:0005764 | lysosome(GO:0005764) |
0.7 | 13.2 | GO:0016581 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
0.4 | 7.8 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
0.1 | 7.0 | GO:0031965 | nuclear membrane(GO:0031965) |
0.6 | 6.8 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
0.1 | 6.8 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.0 | 5.4 | GO:0005681 | spliceosomal complex(GO:0005681) |
1.6 | 4.8 | GO:0097125 | cyclin B1-CDK1 complex(GO:0097125) |
0.0 | 4.0 | GO:0005667 | transcription factor complex(GO:0005667) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 31.3 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
0.7 | 14.4 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
0.0 | 14.4 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.0 | 10.4 | GO:0003924 | GTPase activity(GO:0003924) |
0.0 | 8.1 | GO:0004175 | endopeptidase activity(GO:0004175) |
0.8 | 7.1 | GO:0004586 | ornithine decarboxylase activity(GO:0004586) |
0.6 | 7.1 | GO:0005111 | type 2 fibroblast growth factor receptor binding(GO:0005111) |
0.1 | 6.6 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.0 | 6.0 | GO:0004518 | nuclease activity(GO:0004518) |
1.4 | 5.5 | GO:0000033 | alpha-1,3-mannosyltransferase activity(GO:0000033) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 11.9 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 5.5 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
0.1 | 4.1 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 3.0 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 2.5 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.0 | 2.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.1 | 2.1 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 2.0 | ST T CELL SIGNAL TRANSDUCTION | T Cell Signal Transduction |
0.0 | 1.9 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.0 | 1.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.2 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.5 | 7.1 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.2 | 6.8 | REACTOME REGULATION OF ORNITHINE DECARBOXYLASE ODC | Genes involved in Regulation of ornithine decarboxylase (ODC) |
0.6 | 6.7 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.0 | 5.3 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.2 | 5.0 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.3 | 4.4 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 3.9 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.1 | 3.3 | REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S | Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
0.1 | 3.0 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |