PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tfdp1b | dr11_v1_chr1_+_230363_230363 | 0.90 | 1.9e-07 | Click! |
tfdp1a | dr11_v1_chr9_+_34950942_34950942 | 0.84 | 5.7e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_5741733 Show fit | 12.07 |
ENSDART00000110243
|
POU class 3 homeobox 2a |
|
chr8_+_29593986 Show fit | 10.68 |
ENSDART00000077642
|
atonal bHLH transcription factor 1a |
|
chr23_-_3759345 Show fit | 9.93 |
ENSDART00000132205
ENSDART00000137707 ENSDART00000189382 |
high mobility group AT-hook 1a |
|
chr19_-_31007417 Show fit | 9.79 |
ENSDART00000048144
|
retinoblastoma binding protein 4 |
|
chr23_-_3758637 Show fit | 7.94 |
ENSDART00000131536
ENSDART00000139408 ENSDART00000137826 |
high mobility group AT-hook 1a |
|
chr8_-_2591654 Show fit | 7.64 |
ENSDART00000049109
|
SET nuclear proto-oncogene a |
|
chr7_+_49715750 Show fit | 7.01 |
ENSDART00000019446
|
achaete-scute family bHLH transcription factor 1b |
|
chr23_-_23401305 Show fit | 6.77 |
ENSDART00000078936
|
hairy-related 9 |
|
chr3_+_41917499 Show fit | 6.17 |
ENSDART00000028673
|
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
|
chr13_+_46941930 Show fit | 6.13 |
ENSDART00000056962
|
F-box protein 5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 29.1 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
0.2 | 18.9 | GO:0031497 | chromatin assembly(GO:0031497) |
0.1 | 15.8 | GO:0043484 | regulation of RNA splicing(GO:0043484) |
0.1 | 15.3 | GO:0009952 | anterior/posterior pattern specification(GO:0009952) |
0.2 | 11.4 | GO:0021575 | hindbrain morphogenesis(GO:0021575) |
3.6 | 10.7 | GO:0009912 | auditory receptor cell fate commitment(GO:0009912) inner ear receptor cell fate commitment(GO:0060120) |
0.2 | 9.9 | GO:0044744 | protein import into nucleus(GO:0006606) protein targeting to nucleus(GO:0044744) single-organism nuclear import(GO:1902593) |
0.2 | 9.6 | GO:0018107 | peptidyl-threonine phosphorylation(GO:0018107) |
0.0 | 8.4 | GO:0000278 | mitotic cell cycle(GO:0000278) |
0.8 | 7.6 | GO:0006189 | 'de novo' IMP biosynthetic process(GO:0006189) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 154.0 | GO:0005634 | nucleus(GO:0005634) |
0.1 | 30.1 | GO:0000785 | chromatin(GO:0000785) |
0.0 | 19.0 | GO:0005654 | nucleoplasm(GO:0005654) |
0.1 | 17.4 | GO:0005694 | chromosome(GO:0005694) |
0.2 | 16.6 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.1 | 13.4 | GO:0005667 | transcription factor complex(GO:0005667) |
3.2 | 12.9 | GO:0033186 | CAF-1 complex(GO:0033186) |
0.1 | 11.3 | GO:0016607 | nuclear speck(GO:0016607) |
0.3 | 10.5 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.6 | 8.9 | GO:0042555 | MCM complex(GO:0042555) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 69.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
0.1 | 46.8 | GO:0003682 | chromatin binding(GO:0003682) |
0.0 | 39.1 | GO:0003677 | DNA binding(GO:0003677) |
0.1 | 36.0 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.1 | 24.4 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.2 | 17.3 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 13.7 | GO:0003723 | RNA binding(GO:0003723) |
0.3 | 11.5 | GO:0005109 | frizzled binding(GO:0005109) |
0.1 | 10.6 | GO:0042393 | histone binding(GO:0042393) |
0.2 | 9.7 | GO:0008094 | DNA-dependent ATPase activity(GO:0008094) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 32.0 | PID E2F PATHWAY | E2F transcription factor network |
0.3 | 9.5 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 9.5 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.5 | 8.1 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.2 | 7.8 | PID PLK1 PATHWAY | PLK1 signaling events |
0.2 | 7.4 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.2 | 6.1 | PID ATR PATHWAY | ATR signaling pathway |
0.2 | 5.8 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.3 | 4.7 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.2 | 4.6 | SIG IL4RECEPTOR IN B LYPHOCYTES | Genes related to IL4 rceptor signaling in B lymphocytes |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 22.1 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.9 | 15.5 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.3 | 13.0 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.8 | 10.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.3 | 8.7 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
0.5 | 7.6 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 7.6 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.4 | 6.9 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.3 | 5.5 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.1 | 5.4 | REACTOME APC C CDH1 MEDIATED DEGRADATION OF CDC20 AND OTHER APC C CDH1 TARGETED PROTEINS IN LATE MITOSIS EARLY G1 | Genes involved in APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 |