PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tfe3b | dr11_v1_chr11_+_25508129_25508129 | 0.60 | 7.0e-03 | Click! |
tfe3a | dr11_v1_chr8_+_7778770_7778770 | -0.10 | 7.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_+_4540127 Show fit | 1.23 |
ENSDART00000043431
|
nucleoporin 188 |
|
chr18_+_26422124 Show fit | 1.13 |
ENSDART00000060245
|
cathepsin H |
|
chr17_+_32622933 Show fit | 1.12 |
ENSDART00000077418
|
cathepsin Ba |
|
chr1_+_10318089 Show fit | 1.11 |
ENSDART00000029774
|
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1b |
|
chr5_+_61475451 Show fit | 1.10 |
ENSDART00000163444
|
leucine-rich repeats and WD repeat domain containing 1 |
|
chr19_+_15440841 Show fit | 0.99 |
ENSDART00000182329
|
lin-28 homolog A (C. elegans) |
|
chr9_-_14273652 Show fit | 0.95 |
ENSDART00000135458
|
ATP-binding cassette, sub-family B (MDR/TAP), member 6b |
|
chr19_+_15441022 Show fit | 0.92 |
ENSDART00000098970
ENSDART00000140276 |
lin-28 homolog A (C. elegans) |
|
chr2_-_24069331 Show fit | 0.89 |
ENSDART00000156972
ENSDART00000181691 ENSDART00000157041 |
solute carrier family 12 (potassium/chloride transporter), member 7a |
|
chr8_-_50981175 Show fit | 0.84 |
ENSDART00000004065
|
zgc:91909 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | GO:0090504 | epiboly(GO:0090504) |
0.0 | 1.5 | GO:0046856 | phosphatidylinositol dephosphorylation(GO:0046856) |
0.5 | 1.4 | GO:0034382 | chylomicron remnant clearance(GO:0034382) triglyceride-rich lipoprotein particle clearance(GO:0071830) intermediate-density lipoprotein particle clearance(GO:0071831) |
0.0 | 1.4 | GO:0009060 | aerobic respiration(GO:0009060) |
0.1 | 1.3 | GO:0015886 | heme transport(GO:0015886) iron coordination entity transport(GO:1901678) |
0.0 | 1.3 | GO:0006405 | RNA export from nucleus(GO:0006405) |
0.0 | 1.2 | GO:0030917 | midbrain-hindbrain boundary development(GO:0030917) |
0.3 | 1.1 | GO:0070199 | establishment of protein localization to chromosome(GO:0070199) establishment of protein localization to chromatin(GO:0071169) |
0.1 | 1.0 | GO:0000727 | double-strand break repair via break-induced replication(GO:0000727) |
0.1 | 0.9 | GO:0060017 | parathyroid gland development(GO:0060017) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.6 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 1.6 | GO:0000808 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
0.4 | 1.4 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
0.3 | 1.2 | GO:0044611 | nuclear pore inner ring(GO:0044611) |
0.0 | 1.1 | GO:0000776 | kinetochore(GO:0000776) |
0.0 | 0.9 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
0.0 | 0.9 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
0.1 | 0.6 | GO:0016589 | NURF complex(GO:0016589) |
0.1 | 0.6 | GO:0035101 | FACT complex(GO:0035101) |
0.0 | 0.6 | GO:0042555 | MCM complex(GO:0042555) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.9 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.5 | 1.4 | GO:0043395 | heparan sulfate proteoglycan binding(GO:0043395) |
0.0 | 1.4 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.2 | 1.3 | GO:0015232 | heme transporter activity(GO:0015232) |
0.1 | 1.3 | GO:0008327 | methyl-CpG binding(GO:0008327) |
0.0 | 1.2 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.0 | 1.2 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.1 | 1.1 | GO:0034597 | phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity(GO:0034597) |
0.0 | 1.0 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 0.8 | GO:0030145 | manganese ion binding(GO:0030145) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 1.4 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 0.8 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.0 | 0.7 | PID AURORA A PATHWAY | Aurora A signaling |
0.0 | 0.7 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.6 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.0 | 0.5 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 0.4 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.0 | 0.4 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 0.4 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
0.0 | 2.0 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
0.1 | 1.4 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.0 | 1.4 | REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY | Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery |
0.1 | 1.3 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.1 | 0.9 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.1 | 0.7 | REACTOME THE ACTIVATION OF ARYLSULFATASES | Genes involved in The activation of arylsulfatases |
0.0 | 0.7 | REACTOME SYNTHESIS OF PIPS AT THE EARLY ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the early endosome membrane |
0.0 | 0.7 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.0 | 0.7 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |