PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tgif1 | dr11_v1_chr24_-_9300160_9300160 | -0.95 | 2.2e-10 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22272181 Show fit | 13.88 |
ENSDART00000113174
|
crystallin, gamma M2d7 |
|
chr16_+_26012569 Show fit | 12.04 |
ENSDART00000148846
|
protease, serine, 59, tandem duplicate 1 |
|
chr9_-_22232902 Show fit | 10.82 |
ENSDART00000101845
|
crystallin, gamma M2d5 |
|
chr9_-_22129788 Show fit | 9.50 |
ENSDART00000124272
ENSDART00000175417 |
crystallin, gamma M2d8 |
|
chr9_-_22205682 Show fit | 9.33 |
ENSDART00000101869
|
crystallin, gamma M2d12 |
|
chr22_-_278328 Show fit | 8.60 |
ENSDART00000098072
|
myosin, heavy polypeptide 1.1, skeletal muscle |
|
chr20_-_25518488 Show fit | 8.58 |
ENSDART00000186993
|
cytochrome P450, family 2, subfamily N, polypeptide 13 |
|
chr3_-_1190132 Show fit | 8.43 |
ENSDART00000149709
|
single-pass membrane protein with aspartate-rich tail 1a |
|
chr9_-_22281854 Show fit | 8.02 |
ENSDART00000146319
|
crystallin, gamma M2d3 |
|
chr16_-_19890303 Show fit | 7.49 |
ENSDART00000147161
ENSDART00000079159 |
histone deacetylase 9b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 80.1 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.3 | 24.8 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.8 | 13.8 | GO:0031468 | nuclear envelope reassembly(GO:0031468) |
0.2 | 11.9 | GO:0006821 | chloride transport(GO:0006821) |
0.1 | 10.2 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.5 | 9.9 | GO:0036376 | cellular potassium ion homeostasis(GO:0030007) sodium ion export from cell(GO:0036376) sodium ion export(GO:0071436) |
0.1 | 9.8 | GO:0006073 | glycogen metabolic process(GO:0005977) cellular glucan metabolic process(GO:0006073) glucan metabolic process(GO:0044042) |
0.1 | 9.8 | GO:0071805 | cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805) |
0.3 | 9.5 | GO:0060319 | primitive erythrocyte differentiation(GO:0060319) |
0.8 | 9.3 | GO:0097090 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 27.2 | GO:0044421 | extracellular region part(GO:0044421) |
0.0 | 26.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.2 | 24.3 | GO:0016459 | myosin complex(GO:0016459) |
0.5 | 16.9 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.3 | 13.9 | GO:0043679 | axon terminus(GO:0043679) neuron projection terminus(GO:0044306) |
0.1 | 13.1 | GO:0099572 | postsynaptic specialization(GO:0099572) |
0.0 | 12.6 | GO:0043005 | neuron projection(GO:0043005) |
0.2 | 11.6 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
1.5 | 10.6 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
0.2 | 9.9 | GO:0030672 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 86.9 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 33.6 | GO:0005509 | calcium ion binding(GO:0005509) |
0.1 | 23.0 | GO:0003774 | motor activity(GO:0003774) |
0.1 | 20.9 | GO:0008017 | microtubule binding(GO:0008017) |
0.5 | 16.9 | GO:0016917 | GABA-A receptor activity(GO:0004890) GABA receptor activity(GO:0016917) |
0.1 | 14.2 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.2 | 13.5 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
0.1 | 11.6 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.1 | 11.4 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.0 | 11.4 | GO:0051015 | actin filament binding(GO:0051015) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 7.9 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.4 | 7.0 | PID IL5 PATHWAY | IL5-mediated signaling events |
0.3 | 6.0 | PID ARF6 PATHWAY | Arf6 signaling events |
0.2 | 5.4 | ST ADRENERGIC | Adrenergic Pathway |
0.1 | 5.4 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.3 | 5.0 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.1 | 4.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.2 | 4.0 | PID CD40 PATHWAY | CD40/CD40L signaling |
0.3 | 3.8 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
0.1 | 3.5 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 11.0 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.4 | 8.1 | REACTOME GROWTH HORMONE RECEPTOR SIGNALING | Genes involved in Growth hormone receptor signaling |
0.6 | 7.9 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.3 | 7.9 | REACTOME PLC BETA MEDIATED EVENTS | Genes involved in PLC beta mediated events |
0.3 | 7.7 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.2 | 6.3 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
0.2 | 6.1 | REACTOME N GLYCAN ANTENNAE ELONGATION IN THE MEDIAL TRANS GOLGI | Genes involved in N-glycan antennae elongation in the medial/trans-Golgi |
0.2 | 5.7 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.2 | 5.5 | REACTOME STEROID HORMONES | Genes involved in Steroid hormones |
0.1 | 5.2 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |