PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
thrab | dr11_v1_chr12_-_21834611_21834611 | 0.61 | 5.1e-03 | Click! |
thraa | dr11_v1_chr3_-_34717882_34717882 | 0.56 | 1.2e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_+_39185761 Show fit | 8.45 |
ENSDART00000075992
ENSDART00000140644 |
crystallin, beta A1b |
|
chr6_-_13783604 Show fit | 6.20 |
ENSDART00000149536
ENSDART00000041269 ENSDART00000150102 |
crystallin, beta A2a |
|
chr9_-_22129788 Show fit | 5.64 |
ENSDART00000124272
ENSDART00000175417 |
crystallin, gamma M2d8 |
|
chr9_-_22245572 Show fit | 4.73 |
ENSDART00000114943
|
crystallin, gamma M2d4 |
|
chr9_-_22272181 Show fit | 4.73 |
ENSDART00000113174
|
crystallin, gamma M2d7 |
|
chr9_-_22135576 Show fit | 4.72 |
ENSDART00000101902
|
crystallin, gamma M2d8 |
|
chr21_+_39185461 Show fit | 4.62 |
ENSDART00000178419
|
crystallin, beta A1b |
|
chr12_-_30841679 Show fit | 4.53 |
ENSDART00000105594
|
crystallin, gamma MX |
|
chr9_-_22147567 Show fit | 4.04 |
ENSDART00000110941
|
crystallin, gamma M2d14 |
|
chr10_-_44027391 Show fit | 4.00 |
ENSDART00000145404
|
crystallin, beta B1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 64.5 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 4.0 | GO:0006836 | neurotransmitter transport(GO:0006836) |
0.2 | 3.2 | GO:0032291 | central nervous system myelination(GO:0022010) axon ensheathment in central nervous system(GO:0032291) |
0.1 | 2.5 | GO:0035435 | phosphate ion transmembrane transport(GO:0035435) |
0.1 | 2.4 | GO:0035235 | ionotropic glutamate receptor signaling pathway(GO:0035235) |
0.1 | 2.4 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.8 | 2.3 | GO:0045671 | negative regulation of osteoclast differentiation(GO:0045671) |
0.1 | 2.3 | GO:0009648 | photoperiodism(GO:0009648) |
0.2 | 2.0 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.0 | 1.7 | GO:0007586 | digestion(GO:0007586) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.9 | GO:0030424 | axon(GO:0030424) |
0.0 | 3.7 | GO:0098852 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
0.2 | 3.2 | GO:0043209 | myelin sheath(GO:0043209) |
0.2 | 2.4 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.0 | 2.3 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 2.3 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.0 | 2.2 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.0 | 1.9 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
0.0 | 1.6 | GO:0043025 | neuronal cell body(GO:0043025) |
0.0 | 1.6 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 64.3 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.3 | 4.0 | GO:0005332 | gamma-aminobutyric acid:sodium symporter activity(GO:0005332) |
0.2 | 3.2 | GO:0019911 | structural constituent of myelin sheath(GO:0019911) |
0.1 | 3.2 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.2 | 2.5 | GO:0005315 | inorganic phosphate transmembrane transporter activity(GO:0005315) |
0.1 | 2.4 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
0.0 | 2.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 2.2 | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity(GO:0004198) |
0.1 | 2.1 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.4 | 1.8 | GO:0051430 | mu-type opioid receptor binding(GO:0031852) corticotropin-releasing hormone receptor 1 binding(GO:0051430) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.0 | 1.6 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 1.3 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 1.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.9 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.0 | 0.8 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 0.7 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 0.7 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 0.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 0.5 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.4 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.0 | 1.3 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 1.3 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.1 | 1.2 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.1 | 1.2 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.0 | 1.1 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 1.0 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |
0.0 | 0.9 | REACTOME PROSTACYCLIN SIGNALLING THROUGH PROSTACYCLIN RECEPTOR | Genes involved in Prostacyclin signalling through prostacyclin receptor |
0.0 | 0.8 | REACTOME RECYCLING PATHWAY OF L1 | Genes involved in Recycling pathway of L1 |
0.0 | 0.8 | REACTOME N GLYCAN ANTENNAE ELONGATION IN THE MEDIAL TRANS GOLGI | Genes involved in N-glycan antennae elongation in the medial/trans-Golgi |