PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tlx1 | dr11_v1_chr13_-_28272299_28272299 | -0.73 | 3.5e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_44939104 Show fit | 3.14 |
ENSDART00000192903
|
villin 1 |
|
chr7_+_14291323 Show fit | 2.88 |
ENSDART00000053521
|
Rh family, C glycoprotein a |
|
chr1_+_49568335 Show fit | 2.73 |
ENSDART00000142957
|
collagen, type XVII, alpha 1a |
|
chr2_+_37207461 Show fit | 2.67 |
ENSDART00000138952
ENSDART00000132856 ENSDART00000137272 ENSDART00000143468 |
apolipoprotein Da, duplicate 2 |
|
chr11_-_103136 Show fit | 2.15 |
ENSDART00000173308
ENSDART00000162982 |
engulfment and cell motility 2 |
|
chr25_-_30394746 Show fit | 2.08 |
ENSDART00000185346
|
si:ch211-93f2.1 |
|
chr22_+_38229321 Show fit | 2.07 |
ENSDART00000132670
ENSDART00000104504 |
si:ch211-284e20.8 |
|
chr12_+_22607761 Show fit | 2.06 |
ENSDART00000153112
|
si:dkey-219e21.2 |
|
chr23_-_45504991 Show fit | 1.97 |
ENSDART00000148761
|
collagen type XXIV alpha 1 |
|
chr25_-_4146947 Show fit | 1.80 |
ENSDART00000129268
|
fatty acid desaturase 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 3.1 | GO:2000392 | lamellipodium morphogenesis(GO:0072673) regulation of lamellipodium morphogenesis(GO:2000392) |
0.4 | 2.9 | GO:0072488 | ammonium transmembrane transport(GO:0072488) |
0.1 | 2.7 | GO:0007568 | aging(GO:0007568) |
0.0 | 2.2 | GO:0042738 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.0 | 2.2 | GO:0006909 | phagocytosis(GO:0006909) |
0.1 | 2.1 | GO:0035845 | photoreceptor cell outer segment organization(GO:0035845) |
0.3 | 2.0 | GO:0038063 | collagen-activated tyrosine kinase receptor signaling pathway(GO:0038063) collagen-activated signaling pathway(GO:0038065) |
0.0 | 2.0 | GO:0018108 | peptidyl-tyrosine phosphorylation(GO:0018108) |
0.0 | 1.9 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
0.0 | 1.9 | GO:0008544 | epidermis development(GO:0008544) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 3.1 | GO:0032433 | filopodium tip(GO:0032433) |
0.7 | 2.0 | GO:0005592 | collagen type XI trimer(GO:0005592) |
0.2 | 2.0 | GO:0071914 | prominosome(GO:0071914) |
0.0 | 2.0 | GO:0016459 | myosin complex(GO:0016459) |
0.5 | 1.4 | GO:1990745 | EARP complex(GO:1990745) |
0.0 | 1.2 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 1.1 | GO:0005604 | basement membrane(GO:0005604) |
0.2 | 0.8 | GO:0061702 | inflammasome complex(GO:0061702) |
0.0 | 0.8 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.1 | 0.7 | GO:1990513 | CLOCK-BMAL transcription complex(GO:1990513) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.4 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.1 | 3.1 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
0.1 | 2.9 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
0.0 | 2.2 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.1 | 2.1 | GO:0004869 | cysteine-type endopeptidase inhibitor activity(GO:0004869) |
0.0 | 2.1 | GO:0017124 | SH3 domain binding(GO:0017124) |
0.0 | 2.0 | GO:0015485 | cholesterol binding(GO:0015485) |
0.1 | 1.2 | GO:0047372 | acylglycerol lipase activity(GO:0047372) |
0.0 | 1.2 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.0 | 1.2 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.1 | 2.0 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.5 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.0 | 1.2 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.0 | 0.9 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.9 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 0.7 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.7 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 0.4 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.2 | 1.8 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.1 | 1.4 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.1 | 1.2 | REACTOME FATTY ACYL COA BIOSYNTHESIS | Genes involved in Fatty Acyl-CoA Biosynthesis |
0.1 | 0.9 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.0 | 0.8 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.0 | 0.8 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 0.7 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.0 | 0.7 | REACTOME CELL JUNCTION ORGANIZATION | Genes involved in Cell junction organization |
0.1 | 0.5 | REACTOME RAF MAP KINASE CASCADE | Genes involved in RAF/MAP kinase cascade |