PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tp53 | dr11_v1_chr5_+_24086227_24086227 | 0.87 | 1.5e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_-_27225876 Show fit | 2.19 |
ENSDART00000149204
ENSDART00000149732 |
si:dkey-85n7.7 |
|
chr4_+_23127284 Show fit | 2.12 |
ENSDART00000122675
|
MDM2 oncogene, E3 ubiquitin protein ligase |
|
chr4_+_23127104 Show fit | 2.06 |
ENSDART00000139543
|
MDM2 oncogene, E3 ubiquitin protein ligase |
|
chr24_+_22485710 Show fit | 2.05 |
ENSDART00000146058
|
si:dkey-40h20.1 |
|
chr25_-_7520937 Show fit | 2.00 |
ENSDART00000170050
|
cyclin-dependent kinase inhibitor 1Cb |
|
chr14_+_22132896 Show fit | 1.86 |
ENSDART00000138274
|
cyclin G1 |
|
chr4_+_23126558 Show fit | 1.79 |
ENSDART00000162859
|
MDM2 oncogene, E3 ubiquitin protein ligase |
|
chr5_+_24089334 Show fit | 1.75 |
ENSDART00000183748
|
tumor protein p53 |
|
chr7_+_26049818 Show fit | 1.70 |
ENSDART00000173611
|
si:dkey-6n21.12 |
|
chr17_+_25849332 Show fit | 1.62 |
ENSDART00000191994
|
acyl-CoA synthetase short chain family member 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 6.0 | GO:1904036 | negative regulation of epithelial cell apoptotic process(GO:1904036) |
0.1 | 2.5 | GO:0030199 | collagen fibril organization(GO:0030199) |
0.0 | 2.5 | GO:0061640 | cytoskeleton-dependent cytokinesis(GO:0061640) |
0.3 | 2.0 | GO:0045736 | negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030) |
0.4 | 1.8 | GO:0008594 | photoreceptor cell morphogenesis(GO:0008594) negative regulation of epithelial to mesenchymal transition(GO:0010719) |
0.1 | 1.8 | GO:0021884 | forebrain neuron development(GO:0021884) |
0.6 | 1.7 | GO:0010525 | regulation of transposition, RNA-mediated(GO:0010525) negative regulation of transposition, RNA-mediated(GO:0010526) transposition, RNA-mediated(GO:0032197) positive regulation of neuron apoptotic process(GO:0043525) positive regulation of neuron death(GO:1901216) |
0.3 | 1.7 | GO:0035332 | positive regulation of hippo signaling(GO:0035332) |
0.5 | 1.6 | GO:0005981 | regulation of glycogen catabolic process(GO:0005981) |
0.3 | 1.6 | GO:0019427 | acetate metabolic process(GO:0006083) acetyl-CoA biosynthetic process from acetate(GO:0019427) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.5 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 2.3 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.0 | 1.8 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.1 | 1.6 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
0.0 | 1.6 | GO:0030018 | Z disc(GO:0030018) |
0.0 | 1.5 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.0 | 1.5 | GO:0030027 | lamellipodium(GO:0030027) |
0.3 | 1.4 | GO:0032299 | ribonuclease H2 complex(GO:0032299) |
0.0 | 1.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.0 | 1.4 | GO:0005643 | nuclear pore(GO:0005643) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.8 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 2.2 | GO:0005518 | collagen binding(GO:0005518) |
0.3 | 2.0 | GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) |
0.0 | 2.0 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.1 | 1.8 | GO:0045159 | myosin II binding(GO:0045159) |
0.1 | 1.7 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
0.3 | 1.6 | GO:0003987 | acetate-CoA ligase activity(GO:0003987) |
0.1 | 1.6 | GO:2001069 | glycogen binding(GO:2001069) |
0.1 | 1.6 | GO:0042805 | actinin binding(GO:0042805) |
0.0 | 1.5 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 7.7 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
0.1 | 2.5 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 1.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.1 | 1.6 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.0 | 1.4 | PID LKB1 PATHWAY | LKB1 signaling events |
0.0 | 1.3 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 1.1 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.0 | 1.1 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.0 | 1.1 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.0 | 1.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.0 | REACTOME AKT PHOSPHORYLATES TARGETS IN THE CYTOSOL | Genes involved in AKT phosphorylates targets in the cytosol |
0.2 | 2.2 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.3 | 1.6 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.0 | 1.4 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.0 | 1.4 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 1.3 | REACTOME KINESINS | Genes involved in Kinesins |
0.1 | 1.1 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.0 | 1.1 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.0 | 0.9 | REACTOME LATE PHASE OF HIV LIFE CYCLE | Genes involved in Late Phase of HIV Life Cycle |
0.0 | 0.8 | REACTOME RNA POL I TRANSCRIPTION INITIATION | Genes involved in RNA Polymerase I Transcription Initiation |