PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tp73 | dr11_v1_chr8_+_48858132_48858149 | -0.44 | 6.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_14333441 Show fit | 3.32 |
ENSDART00000171969
|
polypyrimidine tract binding protein 1b |
|
chr4_+_25680480 Show fit | 2.77 |
ENSDART00000100737
|
acyl-CoA thioesterase 17 |
|
chr2_+_44528255 Show fit | 1.99 |
ENSDART00000193834
|
PAS domain containing serine/threonine kinase |
|
chr4_+_23127104 Show fit | 1.83 |
ENSDART00000139543
|
MDM2 oncogene, E3 ubiquitin protein ligase |
|
chr9_-_52598343 Show fit | 1.69 |
ENSDART00000167922
|
X-ray repair complementing defective repair in Chinese hamster cells 5 |
|
chr5_+_40837539 Show fit | 1.61 |
ENSDART00000188279
|
si:dkey-3h3.3 |
|
chr2_+_37837249 Show fit | 1.61 |
ENSDART00000113337
|
poly (ADP-ribose) polymerase 2 |
|
chr4_+_23127284 Show fit | 1.50 |
ENSDART00000122675
|
MDM2 oncogene, E3 ubiquitin protein ligase |
|
chr3_+_31680592 Show fit | 1.47 |
ENSDART00000172456
|
myosin, light chain kinase 5 |
|
chr7_+_41314862 Show fit | 1.41 |
ENSDART00000185198
|
zgc:165532 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 4.6 | GO:1904036 | negative regulation of epithelial cell apoptotic process(GO:1904036) |
0.0 | 3.3 | GO:0043484 | regulation of RNA splicing(GO:0043484) |
0.0 | 3.2 | GO:0035383 | acyl-CoA metabolic process(GO:0006637) thioester metabolic process(GO:0035383) |
0.2 | 2.0 | GO:0070874 | negative regulation of glycogen biosynthetic process(GO:0045719) negative regulation of glycogen metabolic process(GO:0070874) |
0.3 | 1.7 | GO:0010332 | response to gamma radiation(GO:0010332) cellular response to gamma radiation(GO:0071480) |
0.1 | 1.6 | GO:0070212 | protein poly-ADP-ribosylation(GO:0070212) |
0.3 | 1.4 | GO:0033301 | cell cycle comprising mitosis without cytokinesis(GO:0033301) |
0.2 | 1.4 | GO:0051561 | positive regulation of mitochondrial calcium ion concentration(GO:0051561) |
0.0 | 1.3 | GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0000079) regulation of cyclin-dependent protein kinase activity(GO:1904029) |
0.2 | 1.2 | GO:0007344 | karyogamy(GO:0000741) pronuclear fusion(GO:0007344) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.3 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 1.4 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
0.0 | 1.4 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.0 | 1.3 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.0 | 1.3 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.0 | 1.3 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.0 | 1.2 | GO:0031965 | nuclear membrane(GO:0031965) |
0.0 | 0.6 | GO:0035102 | PRC1 complex(GO:0035102) |
0.1 | 0.5 | GO:0032040 | small-subunit processome(GO:0032040) |
0.0 | 0.5 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.6 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 3.2 | GO:0047617 | acyl-CoA hydrolase activity(GO:0047617) |
0.0 | 2.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.1 | 1.7 | GO:0042162 | telomeric DNA binding(GO:0042162) |
0.1 | 1.6 | GO:1990404 | protein ADP-ribosylase activity(GO:1990404) |
0.1 | 1.5 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
0.2 | 1.4 | GO:0001130 | bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding(GO:0001217) |
0.0 | 1.4 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 1.3 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.0 | 0.9 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.6 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.1 | 1.7 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.0 | 1.6 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 1.3 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 1.3 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 0.9 | ST STAT3 PATHWAY | STAT3 Pathway |
0.0 | 0.8 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 0.5 | PID INTEGRIN3 PATHWAY | Beta3 integrin cell surface interactions |
0.0 | 0.3 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.0 | 0.1 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.6 | REACTOME AKT PHOSPHORYLATES TARGETS IN THE CYTOSOL | Genes involved in AKT phosphorylates targets in the cytosol |
0.0 | 1.8 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.3 | 1.7 | REACTOME INTEGRATION OF PROVIRUS | Genes involved in Integration of provirus |
0.1 | 0.9 | REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS | Genes involved in Signal regulatory protein (SIRP) family interactions |
0.0 | 0.8 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.0 | 0.5 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.0 | 0.5 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
0.0 | 0.5 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 0.4 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
0.1 | 0.3 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |