PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
vox | dr11_v1_chr13_-_50624743_50624743 | 0.56 | 1.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_-_48667056 Show fit | 1.19 |
ENSDART00000006378
|
cyclin-dependent kinase inhibitor 1Ca |
|
chr8_-_39822917 Show fit | 0.89 |
ENSDART00000067843
|
zgc:162025 |
|
chr3_-_15444396 Show fit | 0.84 |
ENSDART00000104361
|
si:dkey-56d12.4 |
|
chr11_-_33868881 Show fit | 0.83 |
ENSDART00000163295
ENSDART00000172633 ENSDART00000171439 |
si:ch211-227n13.3 |
|
chr10_+_32104305 Show fit | 0.76 |
ENSDART00000099880
|
wingless-type MMTV integration site family, member 11, related |
|
chr16_+_54209504 Show fit | 0.73 |
ENSDART00000020033
|
X-ray repair complementing defective repair in Chinese hamster cells 1 |
|
chr10_-_35257458 Show fit | 0.71 |
ENSDART00000143890
ENSDART00000139107 ENSDART00000082445 |
proline rich 11 |
|
chr11_-_6877973 Show fit | 0.71 |
ENSDART00000160271
|
DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 |
|
chr10_-_8046764 Show fit | 0.67 |
ENSDART00000099031
|
zgc:136254 |
|
chr22_-_36530902 Show fit | 0.59 |
ENSDART00000056188
|
info polymerase (RNA) II (DNA directed) polypeptide H |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.2 | GO:0045736 | negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030) |
0.1 | 0.9 | GO:0097065 | anterior head development(GO:0097065) |
0.2 | 0.8 | GO:0036306 | embryonic heart tube elongation(GO:0036306) |
0.1 | 0.7 | GO:0000012 | single strand break repair(GO:0000012) |
0.0 | 0.7 | GO:0007050 | cell cycle arrest(GO:0007050) |
0.1 | 0.6 | GO:0001709 | cell fate determination(GO:0001709) |
0.0 | 0.6 | GO:0046051 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.2 | 0.5 | GO:0045002 | double-strand break repair via single-strand annealing(GO:0045002) |
0.1 | 0.5 | GO:0035513 | oxidative RNA demethylation(GO:0035513) |
0.1 | 0.5 | GO:2000290 | smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021910) regulation of myotome development(GO:2000290) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.1 | GO:0005665 | DNA-directed RNA polymerase II, core complex(GO:0005665) |
0.0 | 0.7 | GO:0000421 | autophagosome membrane(GO:0000421) |
0.0 | 0.5 | GO:0035861 | site of double-strand break(GO:0035861) |
0.0 | 0.4 | GO:0089701 | U2AF(GO:0089701) |
0.1 | 0.3 | GO:0043625 | delta DNA polymerase complex(GO:0043625) |
0.0 | 0.3 | GO:0005671 | Ada2/Gcn5/Ada3 transcription activator complex(GO:0005671) |
0.0 | 0.3 | GO:0034451 | centriolar satellite(GO:0034451) |
0.0 | 0.3 | GO:0030008 | TRAPP complex(GO:0030008) |
0.0 | 0.3 | GO:0031430 | M band(GO:0031430) |
0.0 | 0.3 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) |
0.2 | 0.8 | GO:0061656 | SUMO conjugating enzyme activity(GO:0061656) |
0.0 | 0.7 | GO:0032266 | phosphatidylinositol-3-phosphate binding(GO:0032266) |
0.0 | 0.7 | GO:0003684 | damaged DNA binding(GO:0003684) |
0.0 | 0.6 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.0 | 0.6 | GO:0042826 | histone deacetylase binding(GO:0042826) |
0.2 | 0.5 | GO:0070336 | flap-structured DNA binding(GO:0070336) |
0.1 | 0.5 | GO:0035516 | oxidative DNA demethylase activity(GO:0035516) |
0.0 | 0.5 | GO:0047676 | arachidonate-CoA ligase activity(GO:0047676) |
0.0 | 0.5 | GO:0070567 | cytidylyltransferase activity(GO:0070567) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 0.5 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.0 | 0.5 | PID BARD1 PATHWAY | BARD1 signaling events |
0.0 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.3 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.0 | 0.2 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.1 | REACTOME VIRAL MESSENGER RNA SYNTHESIS | Genes involved in Viral Messenger RNA Synthesis |
0.1 | 0.7 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.1 | 0.5 | REACTOME DSCAM INTERACTIONS | Genes involved in DSCAM interactions |
0.0 | 0.5 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.0 | 0.5 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.0 | 0.5 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.0 | 0.4 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.0 | 0.3 | REACTOME RESOLUTION OF AP SITES VIA THE MULTIPLE NUCLEOTIDE PATCH REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the multiple-nucleotide patch replacement pathway |
0.0 | 0.2 | REACTOME INSULIN RECEPTOR RECYCLING | Genes involved in Insulin receptor recycling |
0.0 | 0.2 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |