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PRJEB1986: zebrafish developmental stages transcriptome

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Results for vsx1_shox_shox2_uncx4.1_lhx2a

Z-value: 0.89

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Transcription factors associated with vsx1_shox_shox2_uncx4.1_lhx2a

Gene Symbol Gene ID Gene Info
ENSDARG00000056292 visual system homeobox 1 homolog, chx10-like
ENSDARG00000109766 visual system homeobox 1 homolog, chx10-like
ENSDARG00000025891 short stature homeobox
ENSDARG00000075713 short stature homeobox 2
ENSDARG00000037760 Unc4.1 homeobox (C. elegans)
ENSDARG00000037964 LIM homeobox 2a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
vsx1dr11_v1_chr17_-_21066075_21066105-0.512.6e-02Click!
uncx4.1dr11_v1_chr1_+_9290103_92901030.455.5e-02Click!
shox2dr11_v1_chr15_-_2188332_2188422-0.418.2e-02Click!
shoxdr11_v1_chr9_+_34641237_34641237-0.321.9e-01Click!
lhx2adr11_v1_chr21_-_8420830_84208300.194.3e-01Click!

Activity profile of vsx1_shox_shox2_uncx4.1_lhx2a motif

1dpf-1 1dpf-2 1dpf-3 1dpf-4 1dpf-5 2dpf-1 2dpf-2 2dpf-3 2dpf-4 3dpf-1 3dpf-2 3dpf-3 3dpf-4 5dpf-1 5dpf-2 5dpf-3 5dpf-4 5dpf-5 14dpf-1 −0.08−0.06−0.04−0.0200.020.040.06
activity (log2(tpm) per TFBS)

Sorted Z-values of vsx1_shox_shox2_uncx4.1_lhx2a motif

−2−1.5−1−0.500.511.53dpf-4 3dpf-3 3dpf-1 3dpf-2 14dpf-1 5dpf-1 5dpf-4 5dpf-3 5dpf-2 1dpf-3 1dpf-2 5dpf-5 1dpf-4 1dpf-5 2dpf-3 1dpf-1 2dpf-4 2dpf-1 2dpf-2 
Z-value

Network of associatons between targets according to the STRING database.

First level regulatory network of vsx1_shox_shox2_uncx4.1_lhx2a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: