PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
wt1a | dr11_v1_chr25_-_15214161_15214161 | 0.71 | 6.7e-04 | Click! |
wt1b | dr11_v1_chr18_-_45617146_45617146 | -0.07 | 7.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_+_43056153 Show fit | 6.75 |
ENSDART00000186377
|
prion protein a |
|
chr4_+_68562464 Show fit | 6.49 |
ENSDART00000192954
|
|
|
chr2_-_22535 Show fit | 6.10 |
ENSDART00000157877
|
|
|
chr20_-_25518488 Show fit | 5.99 |
ENSDART00000186993
|
cytochrome P450, family 2, subfamily N, polypeptide 13 |
|
chr7_-_10606 Show fit | 5.53 |
ENSDART00000192650
ENSDART00000186761 |
|
|
chr5_+_36614196 Show fit | 5.17 |
ENSDART00000150574
|
neuro-oncological ventral antigen 1 |
|
chr25_+_10811551 Show fit | 5.03 |
ENSDART00000167730
|
alanyl (membrane) aminopeptidase b |
|
chr25_+_24250247 Show fit | 4.63 |
ENSDART00000064646
|
transmembrane protein 86A |
|
chr1_-_59422880 Show fit | 4.57 |
ENSDART00000167244
|
si:ch211-188p14.2 |
|
chr9_-_54001502 Show fit | 4.44 |
ENSDART00000085253
|
midline 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 7.6 | GO:0045773 | positive regulation of axon extension(GO:0045773) |
0.4 | 6.5 | GO:0033173 | calcineurin-NFAT signaling cascade(GO:0033173) |
1.0 | 6.2 | GO:0045852 | pH elevation(GO:0045852) intracellular pH elevation(GO:0051454) |
0.3 | 5.9 | GO:0035235 | ionotropic glutamate receptor signaling pathway(GO:0035235) |
0.0 | 5.6 | GO:0043087 | regulation of GTPase activity(GO:0043087) |
0.0 | 5.4 | GO:0006909 | phagocytosis(GO:0006909) |
0.2 | 5.2 | GO:0051568 | histone H3-K4 methylation(GO:0051568) |
0.1 | 5.2 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.2 | 5.1 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.1 | 4.9 | GO:0017144 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.3 | GO:0070382 | exocytic vesicle(GO:0070382) |
0.1 | 6.2 | GO:0035097 | histone methyltransferase complex(GO:0035097) |
0.4 | 5.9 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.1 | 5.6 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.2 | 5.1 | GO:0048788 | cytoskeleton of presynaptic active zone(GO:0048788) |
0.0 | 5.1 | GO:0005874 | microtubule(GO:0005874) |
0.1 | 4.8 | GO:0031901 | early endosome membrane(GO:0031901) |
0.8 | 4.7 | GO:0070062 | extracellular exosome(GO:0070062) |
0.0 | 4.7 | GO:0005884 | actin filament(GO:0005884) |
0.1 | 4.6 | GO:0005871 | kinesin complex(GO:0005871) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.4 | GO:0044325 | ion channel binding(GO:0044325) |
0.0 | 7.1 | GO:0051015 | actin filament binding(GO:0051015) |
0.8 | 6.7 | GO:0016721 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
0.0 | 6.4 | GO:0008017 | microtubule binding(GO:0008017) |
0.3 | 6.2 | GO:0019531 | oxalate transmembrane transporter activity(GO:0019531) |
0.3 | 6.2 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
0.0 | 5.7 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.0 | 5.2 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.0 | 5.0 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.1 | 4.9 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.4 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.1 | 3.7 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.0 | 2.9 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 2.8 | PID BCR 5PATHWAY | BCR signaling pathway |
0.1 | 2.6 | PID PI3KCI AKT PATHWAY | Class I PI3K signaling events mediated by Akt |
0.0 | 2.3 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.2 | 2.1 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 2.0 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 1.9 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 1.7 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.7 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.4 | 3.0 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.2 | 2.8 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.2 | 2.8 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
0.1 | 2.6 | REACTOME TGF BETA RECEPTOR SIGNALING ACTIVATES SMADS | Genes involved in TGF-beta receptor signaling activates SMADs |
0.1 | 2.6 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.0 | 2.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.2 | 2.4 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.1 | 2.3 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.1 | 2.1 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |