PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
xbp1 | dr11_v1_chr5_-_15948833_15948920 | 0.77 | 1.2e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_990149 Show fit | 8.26 |
ENSDART00000054367
|
KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2b |
|
chr16_+_20904754 Show fit | 6.96 |
ENSDART00000006043
|
homeobox A11b |
|
chr3_+_33300522 Show fit | 6.13 |
ENSDART00000114023
|
heat shock protein, alpha-crystallin-related, 9 |
|
chr10_+_16165533 Show fit | 5.82 |
ENSDART00000065045
|
proline-rich coiled-coil 1 |
|
chr3_-_25377163 Show fit | 5.38 |
ENSDART00000055490
|
karyopherin alpha 2 (RAG cohort 1, importin alpha 1) |
|
chr6_+_13506841 Show fit | 4.99 |
ENSDART00000032331
|
GDP-mannose pyrophosphorylase Ab |
|
chr25_+_3759553 Show fit | 4.87 |
ENSDART00000180601
ENSDART00000055845 ENSDART00000157050 ENSDART00000153905 |
THO complex 5 |
|
chr15_-_29388012 Show fit | 4.71 |
ENSDART00000115032
|
serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b |
|
chr24_+_14214831 Show fit | 4.71 |
ENSDART00000004664
|
translocation associated membrane protein 1 |
|
chr2_-_9527129 Show fit | 4.65 |
ENSDART00000157422
ENSDART00000004398 |
coatomer protein complex, subunit epsilon |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 15.0 | GO:0071391 | cellular response to estrogen stimulus(GO:0071391) |
1.8 | 12.4 | GO:0006621 | protein retention in ER lumen(GO:0006621) |
0.0 | 11.0 | GO:0043413 | protein glycosylation(GO:0006486) macromolecule glycosylation(GO:0043413) |
0.3 | 10.7 | GO:0030199 | collagen fibril organization(GO:0030199) |
0.8 | 8.4 | GO:0006616 | SRP-dependent cotranslational protein targeting to membrane, translocation(GO:0006616) |
1.9 | 7.7 | GO:0051645 | Golgi localization(GO:0051645) |
0.2 | 7.7 | GO:0006891 | intra-Golgi vesicle-mediated transport(GO:0006891) |
0.3 | 6.7 | GO:0071577 | zinc II ion transmembrane transport(GO:0071577) |
0.0 | 6.7 | GO:0007346 | regulation of mitotic cell cycle(GO:0007346) |
1.2 | 5.9 | GO:0006011 | UDP-glucose metabolic process(GO:0006011) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 28.4 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
1.6 | 23.3 | GO:0030663 | COPI-coated vesicle membrane(GO:0030663) |
0.3 | 12.8 | GO:0030134 | ER to Golgi transport vesicle(GO:0030134) |
0.4 | 9.8 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
0.0 | 9.0 | GO:0005794 | Golgi apparatus(GO:0005794) |
0.0 | 8.9 | GO:0000139 | Golgi membrane(GO:0000139) |
0.0 | 8.8 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 6.1 | GO:0005923 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.7 | 4.9 | GO:0000445 | THO complex(GO:0000347) THO complex part of transcription export complex(GO:0000445) |
0.0 | 4.5 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 17.4 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
4.1 | 12.4 | GO:0046923 | ER retention sequence binding(GO:0046923) |
0.0 | 10.8 | GO:0008270 | zinc ion binding(GO:0008270) |
0.0 | 10.0 | GO:0005198 | structural molecule activity(GO:0005198) |
0.7 | 8.8 | GO:0005537 | mannose binding(GO:0005537) |
0.2 | 6.7 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.2 | 6.7 | GO:0005518 | collagen binding(GO:0005518) |
1.2 | 5.9 | GO:0003983 | UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983) UTP-monosaccharide-1-phosphate uridylyltransferase activity(GO:0051748) |
0.0 | 5.9 | GO:0030246 | carbohydrate binding(GO:0030246) |
0.3 | 5.8 | GO:0034237 | protein kinase A regulatory subunit binding(GO:0034237) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.8 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
0.3 | 5.4 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.1 | 4.3 | PID AVB3 INTEGRIN PATHWAY | Integrins in angiogenesis |
0.0 | 3.0 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.2 | 2.5 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.0 | 2.5 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.1 | 2.1 | PID ARF 3PATHWAY | Arf1 pathway |
0.1 | 2.1 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.1 | 1.7 | PID NECTIN PATHWAY | Nectin adhesion pathway |
0.0 | 1.4 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 14.3 | REACTOME TRANSPORT TO THE GOLGI AND SUBSEQUENT MODIFICATION | Genes involved in Transport to the Golgi and subsequent modification |
0.1 | 12.9 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
0.7 | 6.7 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
0.2 | 6.1 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.2 | 5.4 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.1 | 5.4 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
0.2 | 3.7 | REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION | Genes involved in Cyclin A/B1 associated events during G2/M transition |
0.1 | 3.6 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.3 | 3.0 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.2 | 3.0 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |