PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ybx1 | dr11_v1_chr8_-_47152001_47152086 | -0.54 | 1.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_+_44883805 Show fit | 7.51 |
ENSDART00000182805
|
si:ch73-361h17.1 |
|
chr2_-_42091926 Show fit | 2.78 |
ENSDART00000142663
|
si:dkey-97a13.12 |
|
chr20_-_52939501 Show fit | 2.26 |
ENSDART00000166508
|
farnesyl-diphosphate farnesyltransferase 1 |
|
chr17_+_45305645 Show fit | 1.48 |
ENSDART00000172488
|
calpain 3a, (p94) |
|
chr25_-_4148719 Show fit | 1.24 |
ENSDART00000112880
ENSDART00000023278 |
fatty acid desaturase 2 |
|
chr1_-_20928772 Show fit | 1.22 |
ENSDART00000078277
|
methylsterol monooxygenase 1 |
|
chr12_+_46960579 Show fit | 1.22 |
ENSDART00000149032
|
ornithine aminotransferase |
|
chr3_+_1167026 Show fit | 1.18 |
ENSDART00000031823
ENSDART00000155340 |
TRIO and F-actin binding protein b |
|
chr6_-_35446110 Show fit | 1.15 |
ENSDART00000058773
|
regulator of G protein signaling 16 |
|
chr18_+_50089000 Show fit | 1.13 |
ENSDART00000058936
|
secretory carrier membrane protein 5b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 3.0 | GO:0045338 | farnesyl diphosphate metabolic process(GO:0045338) |
0.0 | 1.5 | GO:0045214 | sarcomere organization(GO:0045214) |
0.0 | 1.3 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
0.1 | 1.2 | GO:1900026 | positive regulation of substrate adhesion-dependent cell spreading(GO:1900026) |
0.1 | 1.2 | GO:0055129 | proline biosynthetic process(GO:0006561) L-proline biosynthetic process(GO:0055129) |
0.0 | 1.2 | GO:0030641 | regulation of cellular pH(GO:0030641) |
0.1 | 1.1 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.0 | 1.1 | GO:0031114 | regulation of microtubule depolymerization(GO:0031114) |
0.3 | 1.0 | GO:0045671 | negative regulation of osteoclast differentiation(GO:0045671) |
0.1 | 0.9 | GO:0006361 | transcription initiation from RNA polymerase I promoter(GO:0006361) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.2 | GO:0033181 | plasma membrane proton-transporting V-type ATPase complex(GO:0033181) |
0.1 | 1.1 | GO:0048788 | cytoskeleton of presynaptic active zone(GO:0048788) |
0.0 | 0.9 | GO:0005901 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.1 | 0.8 | GO:0005952 | cAMP-dependent protein kinase complex(GO:0005952) |
0.0 | 0.8 | GO:0031932 | TORC2 complex(GO:0031932) |
0.1 | 0.7 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.0 | 0.7 | GO:0031209 | SCAR complex(GO:0031209) |
0.1 | 0.6 | GO:0042613 | MHC class II protein complex(GO:0042613) |
0.0 | 0.6 | GO:0048179 | activin receptor complex(GO:0048179) |
0.0 | 0.6 | GO:0005811 | lipid particle(GO:0005811) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 2.3 | GO:0004311 | farnesyltranstransferase activity(GO:0004311) |
0.0 | 1.5 | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity(GO:0004198) |
0.2 | 1.2 | GO:0000254 | C-4 methylsterol oxidase activity(GO:0000254) |
0.0 | 1.2 | GO:0008483 | transaminase activity(GO:0008483) |
0.1 | 1.0 | GO:0055056 | D-glucose transmembrane transporter activity(GO:0055056) |
0.2 | 0.9 | GO:0042134 | rRNA primary transcript binding(GO:0042134) |
0.2 | 0.9 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.0 | 0.9 | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628) |
0.2 | 0.8 | GO:0070004 | cysteine-type exopeptidase activity(GO:0070004) |
0.2 | 0.8 | GO:0004105 | choline-phosphate cytidylyltransferase activity(GO:0004105) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | PID PI3KCI AKT PATHWAY | Class I PI3K signaling events mediated by Akt |
0.0 | 0.7 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 0.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.5 | PID IL2 STAT5 PATHWAY | IL2 signaling events mediated by STAT5 |
0.0 | 0.5 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.4 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 0.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 0.2 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.7 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.1 | 1.3 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.1 | 1.2 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.1 | 0.9 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 0.8 | REACTOME PKA MEDIATED PHOSPHORYLATION OF CREB | Genes involved in PKA-mediated phosphorylation of CREB |
0.0 | 0.8 | REACTOME CD28 DEPENDENT PI3K AKT SIGNALING | Genes involved in CD28 dependent PI3K/Akt signaling |
0.0 | 0.6 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.0 | 0.5 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.0 | 0.4 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.0 | 0.4 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |