PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
yy1a | dr11_v1_chr17_-_30863252_30863252 | -0.54 | 1.6e-02 | Click! |
yy1b | dr11_v1_chr20_-_54435287_54435287 | -0.19 | 4.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_-_54077740 Show fit | 3.48 |
ENSDART00000027000
|
rhodopsin |
|
chr12_+_13256415 Show fit | 3.39 |
ENSDART00000144542
|
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like |
|
chr20_-_43771871 Show fit | 3.28 |
ENSDART00000153304
|
matrilin 3a |
|
chr17_+_45305645 Show fit | 3.02 |
ENSDART00000172488
|
calpain 3a, (p94) |
|
chr20_-_43775495 Show fit | 2.79 |
ENSDART00000100610
ENSDART00000149001 ENSDART00000148809 ENSDART00000100608 |
matrilin 3a |
|
chr5_-_29643381 Show fit | 2.67 |
ENSDART00000034849
|
glutamate receptor, ionotropic, N-methyl D-aspartate 1b |
|
chr15_-_47107557 Show fit | 2.27 |
ENSDART00000111880
|
|
|
chr7_+_35075847 Show fit | 2.12 |
ENSDART00000193469
ENSDART00000037346 |
chymotrypsinogen B1 |
|
chr13_-_7031033 Show fit | 1.79 |
ENSDART00000193211
|
|
|
chr23_+_36771593 Show fit | 1.67 |
ENSDART00000078240
|
membrane-associated ring finger (C3HC4) 9 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 12.3 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.3 | 5.2 | GO:0035235 | ionotropic glutamate receptor signaling pathway(GO:0035235) |
0.0 | 4.2 | GO:0071804 | cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805) |
1.2 | 3.5 | GO:0016056 | rhodopsin mediated signaling pathway(GO:0016056) |
0.1 | 3.3 | GO:0007193 | adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway(GO:0007193) |
0.0 | 3.2 | GO:1990573 | potassium ion import across plasma membrane(GO:1990573) |
0.0 | 3.1 | GO:0007601 | visual perception(GO:0007601) |
0.1 | 2.8 | GO:0007212 | dopamine receptor signaling pathway(GO:0007212) |
0.5 | 2.6 | GO:0070208 | protein heterotrimerization(GO:0070208) |
0.2 | 2.6 | GO:0048769 | sarcomerogenesis(GO:0048769) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 13.2 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.0 | 10.6 | GO:0043005 | neuron projection(GO:0043005) |
0.0 | 9.3 | GO:0031012 | extracellular matrix(GO:0031012) |
0.1 | 6.0 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 5.9 | GO:0016459 | myosin complex(GO:0016459) |
0.0 | 5.3 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.3 | 5.0 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.1 | 4.9 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 4.3 | GO:0030424 | axon(GO:0030424) |
0.0 | 4.2 | GO:0008021 | synaptic vesicle(GO:0008021) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.5 | GO:0051015 | actin filament binding(GO:0051015) |
0.0 | 5.3 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.3 | 5.0 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
0.1 | 4.9 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.3 | 4.5 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
0.0 | 3.8 | GO:0030276 | clathrin binding(GO:0030276) |
0.1 | 3.6 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.0 | 3.6 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
1.2 | 3.5 | GO:0005502 | 11-cis retinal binding(GO:0005502) |
0.2 | 3.5 | GO:0022851 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.4 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.1 | 3.7 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 2.4 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.1 | 1.6 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 1.5 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.1 | 1.4 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.1 | 1.2 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 1.2 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 1.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.0 | 1.2 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 3.5 | REACTOME OPSINS | Genes involved in Opsins |
0.2 | 3.5 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.4 | 2.7 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.1 | 2.7 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 2.2 | REACTOME BOTULINUM NEUROTOXICITY | Genes involved in Botulinum neurotoxicity |
0.1 | 2.2 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.1 | 1.8 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.1 | 1.8 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.4 | 1.7 | REACTOME RAS ACTIVATION UOPN CA2 INFUX THROUGH NMDA RECEPTOR | Genes involved in Ras activation uopn Ca2+ infux through NMDA receptor |
0.1 | 1.7 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |