PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
zbtb14 | dr11_v1_chr24_+_41989108_41989108 | -0.28 | 2.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22281854 Show fit | 19.85 |
ENSDART00000146319
|
crystallin, gamma M2d3 |
|
chr14_+_46313135 Show fit | 12.69 |
ENSDART00000172902
|
crystallin, beta A1, like 1 |
|
chr25_+_14165447 Show fit | 10.30 |
ENSDART00000145387
|
SH3 and multiple ankyrin repeat domains 2 |
|
chr18_-_5692292 Show fit | 8.98 |
ENSDART00000121503
|
complexin 3b |
|
chr23_+_45611649 Show fit | 8.74 |
ENSDART00000169521
|
doublecortin-like kinase 2b |
|
chr4_-_797831 Show fit | 8.55 |
ENSDART00000158970
ENSDART00000170012 |
microtubule-associated protein, RP/EB family, member 3b |
|
chr2_-_22688651 Show fit | 8.29 |
ENSDART00000013863
|
alanine-glyoxylate aminotransferase b |
|
chr2_+_42724404 Show fit | 8.09 |
ENSDART00000075392
|
brain abundant, membrane attached signal protein 1 |
|
chr1_+_53321878 Show fit | 7.87 |
ENSDART00000143909
|
TBC1 domain family, member 9 (with GRAM domain) |
|
chr7_+_73332486 Show fit | 7.84 |
ENSDART00000174119
ENSDART00000092051 ENSDART00000192388 |
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 39.6 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.7 | 13.3 | GO:0035235 | ionotropic glutamate receptor signaling pathway(GO:0035235) |
1.3 | 11.9 | GO:1904825 | protein localization to microtubule(GO:0035372) protein localization to microtubule plus-end(GO:1904825) |
0.1 | 11.9 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.3 | 11.8 | GO:0046847 | filopodium assembly(GO:0046847) |
0.2 | 10.2 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
0.1 | 10.1 | GO:0090630 | activation of GTPase activity(GO:0090630) |
0.4 | 8.6 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
1.4 | 8.3 | GO:0006544 | glycine metabolic process(GO:0006544) glycine biosynthetic process(GO:0006545) |
0.3 | 8.3 | GO:0043666 | regulation of phosphoprotein phosphatase activity(GO:0043666) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 27.3 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
1.1 | 16.0 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.1 | 14.8 | GO:0099572 | postsynaptic specialization(GO:0099572) |
0.5 | 13.1 | GO:0048788 | cytoskeleton of presynaptic active zone(GO:0048788) |
0.5 | 11.9 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.4 | 10.2 | GO:0043195 | terminal bouton(GO:0043195) |
0.1 | 10.2 | GO:0034703 | cation channel complex(GO:0034703) |
0.0 | 8.6 | GO:0005911 | cell-cell junction(GO:0005911) |
0.1 | 8.4 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.3 | 7.8 | GO:0031594 | neuromuscular junction(GO:0031594) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 39.6 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 25.1 | GO:0005509 | calcium ion binding(GO:0005509) |
0.8 | 16.0 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
0.0 | 12.9 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.1 | 9.0 | GO:0019905 | syntaxin binding(GO:0019905) |
0.2 | 8.6 | GO:0044325 | ion channel binding(GO:0044325) |
0.4 | 8.5 | GO:0015279 | store-operated calcium channel activity(GO:0015279) |
0.2 | 8.5 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
0.3 | 8.3 | GO:0008483 | transaminase activity(GO:0008483) |
0.1 | 8.3 | GO:0019903 | protein phosphatase binding(GO:0019903) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 13.6 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 7.3 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.3 | 5.5 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.1 | 5.2 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.3 | 4.7 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.1 | 3.9 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.1 | 3.9 | PID IL2 1PATHWAY | IL2-mediated signaling events |
0.1 | 3.7 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.1 | 3.2 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
0.2 | 2.2 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.7 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.1 | 5.6 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.2 | 5.4 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.5 | 4.7 | REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE | Genes involved in Regulation of Insulin Secretion by Acetylcholine |
0.2 | 4.0 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.2 | 3.9 | REACTOME GROWTH HORMONE RECEPTOR SIGNALING | Genes involved in Growth hormone receptor signaling |
0.1 | 3.9 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.2 | 3.7 | REACTOME INSULIN SYNTHESIS AND PROCESSING | Genes involved in Insulin Synthesis and Processing |
0.1 | 3.7 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 3.7 | REACTOME CIRCADIAN CLOCK | Genes involved in Circadian Clock |