PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
zbtb18 | dr11_v1_chr13_+_11436130_11436130 | -0.57 | 1.1e-02 | Click! |
zbtb42 | dr11_v1_chr17_-_1407593_1407725 | 0.48 | 3.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_+_25226558 Show fit | 4.50 |
ENSDART00000168480
|
syncollin, tandem duplicate 2 |
|
chr8_-_25247284 Show fit | 4.01 |
ENSDART00000132697
|
guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 |
|
chr24_-_26282672 Show fit | 3.85 |
ENSDART00000176663
|
actinodin1 |
|
chr18_+_45550783 Show fit | 3.76 |
ENSDART00000138075
|
kinesin family member C3 |
|
chr18_-_46241775 Show fit | 3.24 |
ENSDART00000145999
ENSDART00000134244 ENSDART00000185021 ENSDART00000181855 |
periaxin |
|
chr15_-_30816370 Show fit | 3.01 |
ENSDART00000142982
ENSDART00000050649 ENSDART00000136901 ENSDART00000100194 |
musashi RNA-binding protein 2b |
|
chr6_+_612594 Show fit | 2.90 |
ENSDART00000150903
|
kynureninase |
|
chr3_-_53486169 Show fit | 2.75 |
ENSDART00000115243
|
heme-binding protein soul5 |
|
chr18_-_21097663 Show fit | 2.74 |
ENSDART00000060196
|
alanyl (membrane) aminopeptidase a |
|
chr21_+_25216397 Show fit | 2.70 |
ENSDART00000130970
|
syncollin, tandem duplicate 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.2 | GO:0006887 | exocytosis(GO:0006887) |
0.3 | 4.3 | GO:0021772 | olfactory bulb development(GO:0021772) olfactory lobe development(GO:0021988) |
0.1 | 4.3 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 4.3 | GO:0071277 | cellular response to calcium ion(GO:0071277) |
0.4 | 4.0 | GO:0050907 | detection of chemical stimulus involved in sensory perception(GO:0050907) |
0.0 | 4.0 | GO:0051216 | cartilage development(GO:0051216) |
1.2 | 3.7 | GO:0097052 | L-kynurenine metabolic process(GO:0097052) L-kynurenine catabolic process(GO:0097053) |
0.2 | 3.7 | GO:0007274 | neuromuscular synaptic transmission(GO:0007274) |
0.5 | 3.2 | GO:0032287 | peripheral nervous system myelin maintenance(GO:0032287) |
0.2 | 2.9 | GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen(GO:0006123) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 7.9 | GO:0030667 | secretory granule membrane(GO:0030667) |
0.1 | 4.4 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.1 | 4.3 | GO:0005844 | polysome(GO:0005844) |
0.1 | 4.3 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 4.3 | GO:0099572 | postsynaptic specialization(GO:0099572) |
0.2 | 4.0 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.2 | 2.9 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
0.1 | 2.5 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.3 | 2.4 | GO:0000798 | nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991) |
0.2 | 2.2 | GO:0005892 | acetylcholine-gated channel complex(GO:0005892) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.3 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
0.3 | 3.8 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.1 | 3.8 | GO:0008569 | ATP-dependent microtubule motor activity, minus-end-directed(GO:0008569) |
0.7 | 3.7 | GO:0016822 | hydrolase activity, acting on acid carbon-carbon bonds(GO:0016822) hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances(GO:0016823) |
0.1 | 3.5 | GO:0031683 | G-protein beta/gamma-subunit complex binding(GO:0031683) |
0.1 | 2.9 | GO:0015002 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.2 | 2.8 | GO:0015187 | glycine transmembrane transporter activity(GO:0015187) |
0.0 | 2.8 | GO:0020037 | heme binding(GO:0020037) |
0.1 | 2.7 | GO:0070006 | metalloaminopeptidase activity(GO:0070006) |
0.7 | 2.2 | GO:0042166 | neurotransmitter binding(GO:0042165) acetylcholine binding(GO:0042166) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.0 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.1 | 3.8 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.0 | 1.9 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.0 | 1.9 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 1.8 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 1.5 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
0.1 | 1.5 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.0 | 1.4 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.1 | 1.3 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.1 | 1.0 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.7 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.1 | 3.8 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.3 | 3.7 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.2 | 2.8 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 1.9 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.0 | 1.8 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
0.0 | 1.7 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 1.4 | REACTOME ERK MAPK TARGETS | Genes involved in ERK/MAPK targets |
0.0 | 1.0 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.0 | 0.9 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |