PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
znf652 | dr11_v1_chr3_+_15773991_15773991 | -0.55 | 1.4e-02 | Click! |
zbtb47b | dr11_v1_chr24_-_20641000_20641000 | -0.49 | 3.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_16764751 Show fit | 10.26 |
ENSDART00000113862
|
zgc:174154 |
|
chr19_-_32928470 Show fit | 4.70 |
ENSDART00000141404
ENSDART00000050750 |
ribonucleotide reductase M2 b |
|
chr9_-_46415847 Show fit | 4.70 |
ENSDART00000009790
|
connexin 43.4 |
|
chr7_+_29167744 Show fit | 4.68 |
ENSDART00000076345
|
solute carrier family 38, member 8b |
|
chr3_-_54544612 Show fit | 3.87 |
ENSDART00000018044
|
angiopoietin-like 6 |
|
chr22_+_20135443 Show fit | 3.76 |
ENSDART00000143641
|
eukaryotic translation elongation factor 2a, tandem duplicate 1 |
|
chr24_+_21514283 Show fit | 3.68 |
ENSDART00000007066
|
cyclin-dependent kinase 8 |
|
chr13_+_7442023 Show fit | 3.64 |
ENSDART00000080975
|
tumor necrosis factor, alpha-induced protein 2b |
|
chr20_-_29498178 Show fit | 3.48 |
ENSDART00000152986
ENSDART00000027851 ENSDART00000152954 |
ribonucleotide reductase M2 polypeptide |
|
chr16_-_7228276 Show fit | 3.48 |
ENSDART00000149030
|
5'-nucleotidase, cytosolic IIIA |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 122.9 | GO:0006355 | regulation of transcription, DNA-templated(GO:0006355) |
0.7 | 8.2 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
1.4 | 5.6 | GO:0008356 | asymmetric cell division(GO:0008356) |
0.1 | 4.7 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
0.4 | 4.5 | GO:0046548 | retinal rod cell development(GO:0046548) |
0.1 | 3.8 | GO:0006414 | translational elongation(GO:0006414) |
0.4 | 3.6 | GO:0051601 | exocyst localization(GO:0051601) |
0.3 | 3.5 | GO:0006189 | 'de novo' IMP biosynthetic process(GO:0006189) |
0.2 | 3.4 | GO:0006490 | oligosaccharide-lipid intermediate biosynthetic process(GO:0006490) |
0.1 | 3.4 | GO:0090307 | mitotic spindle assembly(GO:0090307) microtubule cytoskeleton organization involved in mitosis(GO:1902850) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 88.3 | GO:0005634 | nucleus(GO:0005634) |
0.1 | 6.7 | GO:0000776 | kinetochore(GO:0000776) |
0.8 | 5.6 | GO:0005826 | actomyosin contractile ring(GO:0005826) |
0.1 | 4.8 | GO:0016592 | mediator complex(GO:0016592) |
0.0 | 4.2 | GO:1990904 | ribonucleoprotein complex(GO:1990904) |
0.2 | 3.2 | GO:0042627 | chylomicron(GO:0042627) |
0.2 | 3.1 | GO:0090545 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
0.2 | 2.9 | GO:0071007 | U2-type catalytic step 2 spliceosome(GO:0071007) |
0.1 | 2.8 | GO:0000145 | exocyst(GO:0000145) |
0.1 | 2.8 | GO:0031970 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 137.0 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
1.2 | 8.2 | GO:0061731 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.1 | 7.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 5.9 | GO:0005525 | GTP binding(GO:0005525) |
0.3 | 4.4 | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861) |
0.1 | 3.8 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.3 | 3.7 | GO:0008353 | RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353) |
0.2 | 3.5 | GO:0008253 | 5'-nucleotidase activity(GO:0008253) |
0.0 | 3.5 | GO:0005484 | SNAP receptor activity(GO:0005484) |
0.6 | 3.2 | GO:0060228 | phosphatidylcholine-sterol O-acyltransferase activator activity(GO:0060228) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.2 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 4.9 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 3.9 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.2 | 3.1 | PID BETA CATENIN DEG PATHWAY | Degradation of beta catenin |
0.1 | 2.0 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 1.5 | PID PLK1 PATHWAY | PLK1 signaling events |
0.2 | 1.2 | ST INTERFERON GAMMA PATHWAY | Interferon gamma pathway. |
0.0 | 1.2 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 1.1 | PID ARF 3PATHWAY | Arf1 pathway |
0.0 | 0.9 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 8.2 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.2 | 4.4 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.1 | 3.7 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.2 | 3.5 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 3.5 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.1 | 3.5 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 3.4 | REACTOME SULFUR AMINO ACID METABOLISM | Genes involved in Sulfur amino acid metabolism |
0.2 | 3.1 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.1 | 2.8 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
0.1 | 2.7 | REACTOME SCF BETA TRCP MEDIATED DEGRADATION OF EMI1 | Genes involved in SCF-beta-TrCP mediated degradation of Emi1 |