PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
zbtb7c | dr11_v1_chr21_-_3201027_3201027 | 0.74 | 2.7e-04 | Click! |
zbtb7a | dr11_v1_chr22_-_20379045_20379045 | 0.73 | 4.3e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_+_41181869 Show fit | 7.76 |
ENSDART00000002046
|
opsin 1 (cone pigments), medium-wave-sensitive, 1 |
|
chr21_+_25187210 Show fit | 6.02 |
ENSDART00000101147
ENSDART00000167528 |
si:dkey-183i3.5 |
|
chr24_-_26304386 Show fit | 5.82 |
ENSDART00000175416
|
otospiralin |
|
chr10_-_24371312 Show fit | 5.65 |
ENSDART00000149362
|
phosphatidylinositol transfer protein, alpha b |
|
chr11_-_3552067 Show fit | 5.64 |
ENSDART00000163656
|
si:dkey-33m11.6 |
|
chr19_+_43123331 Show fit | 4.93 |
ENSDART00000187836
|
|
|
chr4_+_17279966 Show fit | 3.11 |
ENSDART00000067005
ENSDART00000137487 |
branched chain amino-acid transaminase 1, cytosolic |
|
chr2_-_54054225 Show fit | 2.94 |
ENSDART00000167239
|
|
|
chr9_-_10003711 Show fit | 2.76 |
ENSDART00000124516
ENSDART00000102448 |
UDP glucuronosyltransferase 1 family a, b |
|
chr12_-_43711918 Show fit | 2.70 |
ENSDART00000193110
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.8 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
0.1 | 5.8 | GO:0007605 | sensory perception of sound(GO:0007605) |
0.1 | 5.7 | GO:0015914 | phospholipid transport(GO:0015914) |
0.8 | 3.1 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
0.0 | 3.0 | GO:0046839 | phospholipid dephosphorylation(GO:0046839) |
0.9 | 2.7 | GO:0072579 | establishment of synaptic specificity at neuromuscular junction(GO:0007529) molybdenum incorporation into molybdenum-molybdopterin complex(GO:0018315) metal incorporation into metallo-molybdopterin complex(GO:0042040) glycine receptor clustering(GO:0072579) |
0.2 | 2.5 | GO:0070262 | peptidyl-serine dephosphorylation(GO:0070262) |
0.1 | 2.4 | GO:0045773 | positive regulation of axon extension(GO:0045773) |
0.3 | 1.9 | GO:0051791 | medium-chain fatty acid metabolic process(GO:0051791) medium-chain fatty acid catabolic process(GO:0051793) |
0.1 | 1.9 | GO:0046549 | detection of visible light(GO:0009584) retinal cone cell development(GO:0046549) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.8 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.1 | 6.0 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 2.7 | GO:0099572 | postsynaptic specialization(GO:0099572) |
0.1 | 2.5 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
0.2 | 2.4 | GO:0044295 | axonal growth cone(GO:0044295) |
0.1 | 1.7 | GO:0071014 | post-mRNA release spliceosomal complex(GO:0071014) |
0.1 | 1.7 | GO:0032591 | dendritic spine membrane(GO:0032591) |
0.0 | 1.6 | GO:0005604 | basement membrane(GO:0005604) |
0.1 | 1.5 | GO:0097431 | mitotic spindle pole(GO:0097431) |
0.0 | 1.5 | GO:0031201 | SNARE complex(GO:0031201) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.8 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.8 | 5.7 | GO:0008526 | phosphatidylinositol transporter activity(GO:0008526) |
0.1 | 5.3 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.8 | 3.1 | GO:0052654 | branched-chain-amino-acid transaminase activity(GO:0004084) L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656) |
0.1 | 3.0 | GO:0042577 | lipid phosphatase activity(GO:0042577) |
0.9 | 2.7 | GO:0061599 | molybdopterin adenylyltransferase activity(GO:0061598) molybdopterin molybdotransferase activity(GO:0061599) |
0.5 | 2.4 | GO:0008046 | axon guidance receptor activity(GO:0008046) |
0.0 | 2.3 | GO:0019888 | protein phosphatase regulator activity(GO:0019888) |
0.1 | 1.9 | GO:0034596 | phosphatidylinositol phosphate 4-phosphatase activity(GO:0034596) |
0.1 | 1.9 | GO:0003995 | acyl-CoA dehydrogenase activity(GO:0003995) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 2.1 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.0 | 1.9 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.9 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
0.1 | 0.8 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.1 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.1 | 2.1 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.1 | 1.9 | REACTOME MITOCHONDRIAL FATTY ACID BETA OXIDATION | Genes involved in Mitochondrial Fatty Acid Beta-Oxidation |
0.1 | 1.9 | REACTOME SYNTHESIS OF PIPS AT THE PLASMA MEMBRANE | Genes involved in Synthesis of PIPs at the plasma membrane |
0.1 | 1.8 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 1.5 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.1 | 1.3 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.1 | 1.1 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.1 | 1.0 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.0 | 1.0 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |