PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
zbtb7b | dr11_v1_chr16_-_54810464_54810464 | 0.65 | 2.6e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_16764751 Show fit | 4.23 |
ENSDART00000113862
|
zgc:174154 |
|
chr1_-_59571758 Show fit | 2.41 |
ENSDART00000193546
ENSDART00000167087 |
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 |
|
chr7_+_19552381 Show fit | 2.29 |
ENSDART00000169060
|
si:ch211-212k18.5 |
|
chr7_-_54677143 Show fit | 1.87 |
ENSDART00000163748
|
cyclin D1 |
|
chr16_-_31435020 Show fit | 1.86 |
ENSDART00000138508
|
zgc:194210 |
|
chr25_-_37331513 Show fit | 1.59 |
ENSDART00000111862
|
low density lipoprotein receptor class A domain containing 3 |
|
chr3_-_16289826 Show fit | 1.49 |
ENSDART00000131972
|
branched chain keto acid dehydrogenase E1, beta polypeptide, like |
|
chr17_-_8312923 Show fit | 1.45 |
ENSDART00000064678
|
lefty2 |
|
chr11_-_30138299 Show fit | 1.29 |
ENSDART00000172106
|
Scm polycomb group protein like 2 |
|
chr1_+_15062 Show fit | 1.28 |
ENSDART00000169005
|
centrosomal protein 97 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.4 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.0 | 2.1 | GO:0043484 | regulation of RNA splicing(GO:0043484) |
0.4 | 1.9 | GO:0031571 | mitotic G1 DNA damage checkpoint(GO:0031571) |
0.1 | 1.6 | GO:0007520 | myoblast fusion(GO:0007520) |
0.1 | 1.4 | GO:0003128 | heart field specification(GO:0003128) |
0.2 | 1.3 | GO:0044209 | AMP salvage(GO:0044209) |
0.2 | 1.3 | GO:0003272 | endocardial cushion formation(GO:0003272) |
0.1 | 1.3 | GO:0051121 | lipoxygenase pathway(GO:0019372) linoleic acid metabolic process(GO:0043651) hepoxilin metabolic process(GO:0051121) hepoxilin biosynthetic process(GO:0051122) |
0.1 | 1.2 | GO:0021628 | olfactory nerve development(GO:0021553) olfactory nerve morphogenesis(GO:0021627) olfactory nerve formation(GO:0021628) |
0.3 | 1.1 | GO:0072314 | glomerular visceral epithelial cell fate commitment(GO:0072149) glomerular epithelial cell fate commitment(GO:0072314) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.2 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 2.2 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.0 | 1.7 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 1.6 | GO:0098636 | protein complex involved in cell adhesion(GO:0098636) |
0.1 | 1.3 | GO:0005869 | dynactin complex(GO:0005869) |
0.1 | 1.0 | GO:0030663 | COPI-coated vesicle membrane(GO:0030663) |
0.0 | 1.0 | GO:0016592 | mediator complex(GO:0016592) |
0.1 | 0.8 | GO:0035060 | brahma complex(GO:0035060) |
0.0 | 0.8 | GO:0005640 | nuclear outer membrane(GO:0005640) |
0.2 | 0.7 | GO:1990498 | mitotic spindle microtubule(GO:1990498) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 3.1 | GO:0042393 | histone binding(GO:0042393) |
0.2 | 2.4 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
0.0 | 2.2 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 1.9 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.0 | 1.7 | GO:0003713 | transcription coactivator activity(GO:0003713) |
0.0 | 1.6 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
0.1 | 1.4 | GO:0005160 | transforming growth factor beta receptor binding(GO:0005160) |
0.3 | 1.3 | GO:0004001 | adenosine kinase activity(GO:0004001) |
0.0 | 1.3 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.2 | 1.9 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.1 | 1.4 | ST STAT3 PATHWAY | STAT3 Pathway |
0.0 | 1.0 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.0 | 0.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 0.4 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
0.0 | 0.4 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.0 | 0.4 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.0 | 1.5 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.0 | 1.0 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.1 | 0.9 | REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS | Genes involved in Signal regulatory protein (SIRP) family interactions |
0.0 | 0.9 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.0 | 0.6 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.0 | 0.6 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.1 | 0.5 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
0.0 | 0.5 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 0.5 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |