PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
zeb1a | dr11_v1_chr2_-_43850637_43850637 | 0.65 | 2.6e-03 | Click! |
zeb1b | dr11_v1_chr12_-_26851726_26851726 | -0.10 | 7.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr18_+_907266 Show fit | 3.89 |
ENSDART00000171729
|
pyruvate kinase M1/2a |
|
chr22_+_7439476 Show fit | 3.68 |
ENSDART00000021594
ENSDART00000063389 |
zgc:92041 |
|
chr19_+_233143 Show fit | 2.35 |
ENSDART00000175273
|
synaptic Ras GTPase activating protein 1a |
|
chr7_+_35075847 Show fit | 2.33 |
ENSDART00000193469
ENSDART00000037346 |
chymotrypsinogen B1 |
|
chr14_+_15155684 Show fit | 2.02 |
ENSDART00000167966
|
zgc:158852 |
|
chr9_-_44948488 Show fit | 1.98 |
ENSDART00000059228
|
villin 1 |
|
chr21_+_30043054 Show fit | 1.96 |
ENSDART00000065448
|
fatty acid binding protein 6, ileal (gastrotropin) |
|
chr8_-_21184759 Show fit | 1.86 |
ENSDART00000139257
|
glutaminase 2a (liver, mitochondrial) |
|
chr3_+_23488652 Show fit | 1.83 |
ENSDART00000126282
|
nuclear receptor subfamily 1, group d, member 1 |
|
chr11_-_669558 Show fit | 1.83 |
ENSDART00000173450
|
peroxisome proliferator-activated receptor gamma |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.3 | GO:0007601 | visual perception(GO:0007601) |
0.1 | 6.9 | GO:0071277 | cellular response to calcium ion(GO:0071277) |
0.1 | 4.9 | GO:0006096 | glycolytic process(GO:0006096) |
0.0 | 3.6 | GO:0006813 | potassium ion transport(GO:0006813) |
0.0 | 3.2 | GO:0035725 | sodium ion transmembrane transport(GO:0035725) |
0.0 | 3.0 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.0 | 2.9 | GO:0051017 | actin filament bundle assembly(GO:0051017) |
0.0 | 2.7 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.2 | 2.5 | GO:0006032 | chitin catabolic process(GO:0006032) |
0.2 | 2.4 | GO:0055090 | acylglycerol homeostasis(GO:0055090) triglyceride homeostasis(GO:0070328) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 16.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.1 | 3.9 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.1 | 3.6 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.1 | 3.0 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 2.9 | GO:0016459 | myosin complex(GO:0016459) |
0.0 | 2.8 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.2 | 2.7 | GO:0030285 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.0 | 2.7 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 2.5 | GO:0098839 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.0 | 2.5 | GO:0005865 | striated muscle thin filament(GO:0005865) myofilament(GO:0036379) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 5.0 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.1 | 3.9 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 3.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 3.7 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.2 | 3.4 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
0.0 | 3.4 | GO:0051015 | actin filament binding(GO:0051015) |
0.6 | 3.2 | GO:0070644 | vitamin D response element binding(GO:0070644) |
0.1 | 3.1 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.1 | 3.0 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.2 | 2.5 | GO:0004568 | chitinase activity(GO:0004568) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.0 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 2.0 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 1.5 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
0.0 | 1.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.1 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 0.8 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 0.6 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.1 | 0.5 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
0.0 | 0.5 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.0 | 0.5 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.6 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.5 | 3.7 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.0 | 2.1 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.3 | 2.0 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.3 | 1.6 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |
0.0 | 1.4 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 1.3 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.1 | 1.3 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
0.0 | 1.2 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.1 | 1.1 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |