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PRJEB1986: zebrafish developmental stages transcriptome
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Results for zgc:101100
Z-value: 0.73
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Transcription factors associated with zgc:101100
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| zgc:101100 | dr11_v1_chr8_+_20488322_20488322 | -0.78 | 9.6e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr8_-_54077740 Show fit | 4.72 |
ENSDART00000027000
|
rhodopsin |
|
| chr6_+_41186320 Show fit | 3.35 |
ENSDART00000025241
|
opsin 1 (cone pigments), medium-wave-sensitive, 2 |
|
| chr14_+_32838110 Show fit | 2.63 |
ENSDART00000158077
|
arrestin 3b, retinal (X-arrestin) |
|
| chr17_-_51202339 Show fit | 2.46 |
ENSDART00000167117
|
si:ch1073-469d17.2 |
|
| chr11_-_15090118 Show fit | 2.32 |
ENSDART00000171118
|
solute carrier family 1 (glutamate transporter), member 8a |
|
| chr11_-_15090564 Show fit | 2.19 |
ENSDART00000162079
|
solute carrier family 1 (glutamate transporter), member 8a |
|
| chr7_-_13882988 Show fit | 2.18 |
ENSDART00000169828
|
retinaldehyde binding protein 1a |
|
| chr20_-_29475172 Show fit | 1.92 |
ENSDART00000183164
|
secretogranin V |
|
| chr8_+_23142946 Show fit | 1.92 |
ENSDART00000152933
|
si:ch211-196c10.13 |
|
| chr9_+_13714379 Show fit | 1.85 |
ENSDART00000017593
ENSDART00000145503 |
transmembrane protein 237a |
Network of associatons between targets according to the STRING database.
First level regulatory network of zgc:101100
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.5 | GO:0007602 | phototransduction(GO:0007602) |
| 1.6 | 4.7 | GO:0016056 | rhodopsin mediated signaling pathway(GO:0016056) |
| 0.4 | 4.4 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
| 0.1 | 3.6 | GO:0007634 | optokinetic behavior(GO:0007634) |
| 0.0 | 1.9 | GO:0046883 | regulation of hormone secretion(GO:0046883) |
| 0.0 | 1.8 | GO:0060027 | convergent extension involved in gastrulation(GO:0060027) |
| 0.0 | 1.3 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
| 0.0 | 1.0 | GO:0030010 | establishment of cell polarity(GO:0030010) |
| 0.1 | 0.9 | GO:0061620 | glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
| 0.1 | 0.9 | GO:0046470 | phosphatidylcholine metabolic process(GO:0046470) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.7 | GO:0060170 | ciliary membrane(GO:0060170) |
| 0.1 | 5.2 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
| 0.1 | 2.3 | GO:0035869 | ciliary transition zone(GO:0035869) |
| 0.0 | 1.9 | GO:0031514 | motile cilium(GO:0031514) |
| 0.1 | 1.3 | GO:0033179 | proton-transporting V-type ATPase, V0 domain(GO:0033179) |
| 0.1 | 0.9 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
| 0.1 | 0.8 | GO:0000221 | vacuolar proton-transporting V-type ATPase, V1 domain(GO:0000221) |
| 0.0 | 0.8 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
| 0.0 | 0.6 | GO:0002116 | semaphorin receptor complex(GO:0002116) |
| 0.0 | 0.4 | GO:0030315 | T-tubule(GO:0030315) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.5 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
| 1.6 | 4.7 | GO:0005502 | 11-cis retinal binding(GO:0005502) |
| 0.0 | 4.7 | GO:0015293 | symporter activity(GO:0015293) |
| 0.0 | 4.4 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
| 0.0 | 3.6 | GO:1902936 | phosphatidylinositol bisphosphate binding(GO:1902936) |
| 0.0 | 1.8 | GO:0015078 | hydrogen ion transmembrane transporter activity(GO:0015078) |
| 0.2 | 1.5 | GO:0004459 | L-lactate dehydrogenase activity(GO:0004459) |
| 0.2 | 1.3 | GO:0004692 | cGMP-dependent protein kinase activity(GO:0004692) |
| 0.0 | 1.0 | GO:0050321 | tau-protein kinase activity(GO:0050321) |
| 0.1 | 0.9 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.7 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
| 0.0 | 1.1 | ST G ALPHA I PATHWAY | G alpha i Pathway |
| 0.0 | 0.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 9.0 | REACTOME OPSINS | Genes involved in Opsins |
| 0.0 | 1.1 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
| 0.1 | 0.8 | REACTOME TRANSFERRIN ENDOCYTOSIS AND RECYCLING | Genes involved in Transferrin endocytosis and recycling |
| 0.0 | 0.6 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
| 0.1 | 0.4 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |
| 0.0 | 0.3 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |