PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000015554 | zic family member 2 (odd-paired homolog, Drosophila), a | |
ENSDARG00000037178 | zic family member 2 (odd-paired homolog, Drosophila) b | |
ENSDARG00000112354 | zic family member 2 (odd-paired homolog, Drosophila) b |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
zic2a | dr11_v1_chr9_+_31282161_31282161 | -0.34 | 1.6e-01 | Click! |
zic2b | dr11_v1_chr1_+_29858032_29858032 | -0.30 | 2.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_+_83873 Show fit | 6.57 |
ENSDART00000162145
|
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 |
|
chr20_-_25518488 Show fit | 2.95 |
ENSDART00000186993
|
cytochrome P450, family 2, subfamily N, polypeptide 13 |
|
chr4_-_55785014 Show fit | 2.87 |
ENSDART00000181348
|
|
|
chr4_-_55801210 Show fit | 2.87 |
ENSDART00000186943
|
|
|
chr4_-_55829342 Show fit | 2.81 |
ENSDART00000185611
|
|
|
chr18_-_40684756 Show fit | 2.10 |
ENSDART00000113799
ENSDART00000139042 |
si:ch211-132b12.7 |
|
chr19_-_10196370 Show fit | 2.09 |
ENSDART00000091707
|
D site albumin promoter binding protein a |
|
chr5_+_13521081 Show fit | 1.97 |
ENSDART00000171975
|
si:ch211-230g14.6 |
|
chr12_+_47162761 Show fit | 1.95 |
ENSDART00000192339
ENSDART00000167726 |
ryanodine receptor 2 |
|
chr14_-_49859747 Show fit | 1.94 |
ENSDART00000169456
ENSDART00000164967 |
nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.5 | GO:0007601 | visual perception(GO:0007601) |
0.0 | 2.6 | GO:0006171 | cAMP biosynthetic process(GO:0006171) |
0.0 | 2.3 | GO:0042737 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.5 | 2.1 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
0.1 | 1.9 | GO:0070593 | dendrite self-avoidance(GO:0070593) |
0.0 | 1.9 | GO:0051017 | actin filament bundle assembly(GO:0051017) |
0.0 | 1.8 | GO:0006338 | chromatin remodeling(GO:0006338) |
0.2 | 1.6 | GO:1904071 | presynaptic active zone assembly(GO:1904071) |
0.0 | 1.4 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
0.3 | 1.3 | GO:0070208 | protein heterotrimerization(GO:0070208) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.1 | GO:0030424 | axon(GO:0030424) |
0.0 | 1.9 | GO:0097517 | stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517) |
0.2 | 1.8 | GO:0016586 | RSC complex(GO:0016586) |
0.2 | 1.6 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.0 | 1.6 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.0 | 1.4 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 1.3 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.3 | 1.2 | GO:0044609 | DBIRD complex(GO:0044609) |
0.1 | 1.2 | GO:0032420 | stereocilium(GO:0032420) |
0.1 | 1.0 | GO:0005922 | connexon complex(GO:0005922) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | GO:0004016 | adenylate cyclase activity(GO:0004016) |
0.1 | 1.9 | GO:0098632 | protein binding involved in cell-cell adhesion(GO:0098632) |
0.0 | 1.9 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 1.8 | GO:0018024 | histone-lysine N-methyltransferase activity(GO:0018024) |
0.1 | 1.6 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
0.0 | 1.4 | GO:0030165 | PDZ domain binding(GO:0030165) |
0.4 | 1.3 | GO:0001588 | dopamine neurotransmitter receptor activity, coupled via Gs(GO:0001588) |
0.3 | 1.3 | GO:0004949 | cannabinoid receptor activity(GO:0004949) |
0.1 | 1.3 | GO:0022851 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
0.0 | 1.3 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.6 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.1 | 1.9 | PID IL23 PATHWAY | IL23-mediated signaling events |
0.1 | 1.2 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 0.9 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.7 | SIG PIP3 SIGNALING IN B LYMPHOCYTES | Genes related to PIP3 signaling in B lymphocytes |
0.0 | 0.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.4 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.0 | 0.3 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.5 | REACTOME DSCAM INTERACTIONS | Genes involved in DSCAM interactions |
0.1 | 1.3 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.0 | 1.3 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.0 | 1.0 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 0.7 | REACTOME SIGNALING BY FGFR1 FUSION MUTANTS | Genes involved in Signaling by FGFR1 fusion mutants |
0.2 | 0.5 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.0 | 0.5 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
0.0 | 0.4 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.0 | 0.3 | REACTOME GAP JUNCTION TRAFFICKING | Genes involved in Gap junction trafficking |
0.0 | 0.3 | REACTOME ADENYLATE CYCLASE ACTIVATING PATHWAY | Genes involved in Adenylate cyclase activating pathway |