PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
zic6 | dr11_v1_chr14_+_32022272_32022272 | 0.97 | 7.5e-12 | Click! |
zic4 | dr11_v1_chr24_+_4977862_4977862 | 0.92 | 3.3e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_+_31933583 Show fit | 5.45 |
ENSDART00000145639
|
si:dkey-126g1.9 |
|
chr8_+_15269423 Show fit | 5.01 |
ENSDART00000020386
|
glutamate-cysteine ligase, modifier subunit |
|
chr1_-_59571758 Show fit | 4.11 |
ENSDART00000193546
ENSDART00000167087 |
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 |
|
chr21_-_21465111 Show fit | 4.06 |
ENSDART00000141487
|
nectin cell adhesion molecule 3b |
|
chr13_-_39947335 Show fit | 3.51 |
ENSDART00000056996
|
secreted frizzled-related protein 5 |
|
chr17_-_4245311 Show fit | 2.74 |
ENSDART00000055379
|
growth differentiation factor 3 |
|
chr18_+_1615 Show fit | 2.59 |
ENSDART00000082450
|
homer scaffolding protein 2 |
|
chr21_-_37973819 Show fit | 2.41 |
ENSDART00000133405
|
ripply transcriptional repressor 1 |
|
chr20_-_9980318 Show fit | 2.25 |
ENSDART00000080664
|
zgc:86709 |
|
chr23_+_44374041 Show fit | 2.11 |
ENSDART00000136056
|
eph receptor B4b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.6 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
1.3 | 5.0 | GO:0006750 | glutathione biosynthetic process(GO:0006750) |
0.9 | 4.3 | GO:1900145 | nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145) |
0.1 | 4.1 | GO:0007286 | spermatid development(GO:0007286) |
0.1 | 3.7 | GO:0099500 | synaptic vesicle fusion to presynaptic active zone membrane(GO:0031629) vesicle fusion to plasma membrane(GO:0099500) |
1.2 | 3.5 | GO:0044333 | Wnt signaling pathway involved in digestive tract morphogenesis(GO:0044333) |
0.1 | 3.0 | GO:0048814 | regulation of dendrite morphogenesis(GO:0048814) |
0.3 | 2.6 | GO:0021553 | olfactory nerve development(GO:0021553) olfactory nerve morphogenesis(GO:0021627) olfactory nerve formation(GO:0021628) |
0.2 | 2.4 | GO:0032525 | somite rostral/caudal axis specification(GO:0032525) |
0.0 | 2.3 | GO:0090630 | activation of GTPase activity(GO:0090630) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.1 | GO:0043296 | apical junction complex(GO:0043296) |
0.2 | 3.7 | GO:0048787 | presynaptic active zone membrane(GO:0048787) |
0.1 | 2.1 | GO:0032039 | integrator complex(GO:0032039) |
0.1 | 2.0 | GO:0030057 | desmosome(GO:0030057) |
0.0 | 1.9 | GO:0016459 | myosin complex(GO:0016459) |
0.1 | 1.8 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.0 | 1.8 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.0 | 1.6 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.0 | 1.5 | GO:0005925 | focal adhesion(GO:0005925) |
0.1 | 1.2 | GO:0002116 | semaphorin receptor complex(GO:0002116) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.0 | GO:0016874 | ligase activity(GO:0016874) |
0.0 | 4.5 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.0 | 4.5 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.3 | 4.1 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
0.1 | 3.7 | GO:0005484 | SNAP receptor activity(GO:0005484) |
0.1 | 3.5 | GO:0017147 | Wnt-protein binding(GO:0017147) |
0.0 | 2.6 | GO:0008083 | growth factor activity(GO:0008083) |
0.1 | 2.1 | GO:0005003 | ephrin receptor activity(GO:0005003) |
0.0 | 2.0 | GO:0008013 | beta-catenin binding(GO:0008013) |
0.0 | 1.9 | GO:0030898 | actin-dependent ATPase activity(GO:0030898) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.9 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.2 | 3.7 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.1 | 2.2 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 2.0 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
0.1 | 1.9 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.1 | 1.8 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.2 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 1.2 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 0.4 | SA PROGRAMMED CELL DEATH | Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 5.0 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.2 | 3.7 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.1 | 2.5 | REACTOME KINESINS | Genes involved in Kinesins |
0.1 | 2.0 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.1 | 1.9 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
0.1 | 1.6 | REACTOME RNA POL III CHAIN ELONGATION | Genes involved in RNA Polymerase III Chain Elongation |
0.1 | 1.4 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.1 | 1.2 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
0.0 | 1.1 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
0.1 | 0.8 | REACTOME ACTIVATION OF CHAPERONE GENES BY ATF6 ALPHA | Genes involved in Activation of Chaperone Genes by ATF6-alpha |