PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
znf143b | dr11_v1_chr18_-_16937008_16937109 | 0.18 | 4.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_+_3611765 Show fit | 1.38 |
ENSDART00000181481
|
si:dkey-9l20.3 |
|
chr1_-_59252973 Show fit | 1.03 |
ENSDART00000167061
|
si:ch1073-286c18.5 |
|
chr23_+_3618454 Show fit | 0.90 |
ENSDART00000189393
|
si:dkey-9l20.3 |
|
chr23_+_3591690 Show fit | 0.87 |
ENSDART00000180822
|
si:dkey-9l20.3 |
|
chr19_+_1835940 Show fit | 0.84 |
ENSDART00000167372
|
protein tyrosine kinase 2aa |
|
chr24_-_24038800 Show fit | 0.83 |
ENSDART00000080549
|
lysozyme |
|
chr6_-_50730749 Show fit | 0.80 |
ENSDART00000157153
ENSDART00000110441 |
phosphatidylinositol glycan anchor biosynthesis, class U |
|
chr23_+_3620618 Show fit | 0.78 |
ENSDART00000190126
|
si:dkey-9l20.3 |
|
chr24_-_26622423 Show fit | 0.73 |
ENSDART00000182044
|
TRAF2 and NCK interacting kinase b |
|
chr8_+_54263946 Show fit | 0.72 |
ENSDART00000193119
|
transmembrane and coiled-coil domain family 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.9 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
0.1 | 0.8 | GO:0016255 | attachment of GPI anchor to protein(GO:0016255) |
0.1 | 0.8 | GO:0007172 | signal complex assembly(GO:0007172) |
0.1 | 0.7 | GO:0006566 | threonine metabolic process(GO:0006566) threonine catabolic process(GO:0006567) |
0.0 | 0.7 | GO:0043631 | mRNA polyadenylation(GO:0006378) RNA polyadenylation(GO:0043631) |
0.2 | 0.6 | GO:2000815 | regulation of mRNA stability involved in response to stress(GO:0010610) regulation of mRNA stability involved in response to oxidative stress(GO:2000815) |
0.1 | 0.6 | GO:0010826 | negative regulation of centrosome duplication(GO:0010826) negative regulation of centrosome cycle(GO:0046606) |
0.1 | 0.6 | GO:0061511 | centriole elongation(GO:0061511) |
0.0 | 0.6 | GO:0043252 | sodium-independent organic anion transport(GO:0043252) |
0.0 | 0.6 | GO:0006493 | protein O-linked glycosylation(GO:0006493) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
0.0 | 1.2 | GO:0005814 | centriole(GO:0005814) |
0.0 | 0.9 | GO:0005871 | kinesin complex(GO:0005871) |
0.1 | 0.8 | GO:0042765 | GPI-anchor transamidase complex(GO:0042765) |
0.0 | 0.7 | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex(GO:0005847) |
0.0 | 0.7 | GO:0005643 | nuclear pore(GO:0005643) |
0.2 | 0.6 | GO:0031213 | RSF complex(GO:0031213) |
0.0 | 0.6 | GO:0071014 | post-mRNA release spliceosomal complex(GO:0071014) |
0.2 | 0.5 | GO:0010369 | chromocenter(GO:0010369) |
0.1 | 0.5 | GO:0031931 | TORC1 complex(GO:0031931) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.8 | GO:0003796 | lysozyme activity(GO:0003796) |
0.0 | 0.8 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
0.1 | 0.7 | GO:0008743 | L-threonine 3-dehydrogenase activity(GO:0008743) |
0.0 | 0.7 | GO:0017134 | fibroblast growth factor binding(GO:0017134) |
0.0 | 0.6 | GO:0015347 | sodium-independent organic anion transmembrane transporter activity(GO:0015347) |
0.0 | 0.6 | GO:0008376 | acetylgalactosaminyltransferase activity(GO:0008376) |
0.1 | 0.5 | GO:0016863 | intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863) |
0.0 | 0.5 | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861) |
0.0 | 0.5 | GO:0032454 | histone demethylase activity (H3-K9 specific)(GO:0032454) |
0.0 | 0.5 | GO:0019870 | chloride channel inhibitor activity(GO:0019869) potassium channel inhibitor activity(GO:0019870) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 0.7 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.5 | PID LKB1 PATHWAY | LKB1 signaling events |
0.0 | 0.3 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.0 | 0.2 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 0.1 | ST INTERLEUKIN 4 PATHWAY | Interleukin 4 (IL-4) Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | REACTOME MRNA 3 END PROCESSING | Genes involved in mRNA 3'-end processing |
0.0 | 0.9 | REACTOME POST TRANSLATIONAL MODIFICATION SYNTHESIS OF GPI ANCHORED PROTEINS | Genes involved in Post-translational modification: synthesis of GPI-anchored proteins |
0.0 | 0.8 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.0 | 0.7 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.0 | 0.7 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
0.0 | 0.7 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 0.6 | REACTOME BASE FREE SUGAR PHOSPHATE REMOVAL VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Base-free sugar-phosphate removal via the single-nucleotide replacement pathway |
0.0 | 0.6 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.0 | 0.5 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
0.0 | 0.5 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |