PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
znf148 | dr11_v1_chr9_+_38624478_38624533 | 0.57 | 1.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_22974019 Show fit | 1.91 |
ENSDART00000147157
ENSDART00000020434 |
bromodomain and WD repeat domain containing 3 |
|
chr3_-_1938588 Show fit | 1.82 |
ENSDART00000013001
ENSDART00000186405 |
zgc:152753 |
|
chr17_-_4245311 Show fit | 1.43 |
ENSDART00000055379
|
growth differentiation factor 3 |
|
chr11_-_7029897 Show fit | 1.32 |
ENSDART00000077406
ENSDART00000184582 ENSDART00000180369 |
cadherin 27 |
|
chr16_+_5678071 Show fit | 1.11 |
ENSDART00000011166
ENSDART00000134198 ENSDART00000131575 |
zgc:158689 |
|
chr7_-_6279138 Show fit | 1.03 |
ENSDART00000173299
|
si:ch211-220f21.2 |
|
chr7_-_1101071 Show fit | 0.93 |
ENSDART00000176053
|
dynactin 1a |
|
chr14_+_18781082 Show fit | 0.83 |
ENSDART00000108793
|
si:ch211-111e20.1 |
|
chr10_+_38512270 Show fit | 0.82 |
ENSDART00000109752
|
serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a |
|
chr4_-_8093753 Show fit | 0.80 |
ENSDART00000133434
|
WNK lysine deficient protein kinase 1b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 2.2 | GO:0038107 | nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145) |
0.0 | 1.9 | GO:0008360 | regulation of cell shape(GO:0008360) |
0.2 | 1.1 | GO:0031444 | slow-twitch skeletal muscle fiber contraction(GO:0031444) |
0.1 | 1.1 | GO:2000251 | positive regulation of actin cytoskeleton reorganization(GO:2000251) |
0.0 | 1.1 | GO:0030199 | collagen fibril organization(GO:0030199) |
0.1 | 0.9 | GO:0008105 | asymmetric protein localization(GO:0008105) apical protein localization(GO:0045176) |
0.3 | 0.8 | GO:0002369 | T cell cytokine production(GO:0002369) |
0.0 | 0.8 | GO:1902307 | positive regulation of sodium ion transport(GO:0010765) positive regulation of sodium ion transmembrane transport(GO:1902307) regulation of potassium ion import(GO:1903286) positive regulation of potassium ion import(GO:1903288) positive regulation of sodium ion transmembrane transporter activity(GO:2000651) |
0.0 | 0.7 | GO:0032467 | positive regulation of cytokinesis(GO:0032467) |
0.1 | 0.6 | GO:0003422 | growth plate cartilage morphogenesis(GO:0003422) chondrocyte intercalation involved in growth plate cartilage morphogenesis(GO:0003428) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | GO:0016342 | catenin complex(GO:0016342) |
0.0 | 0.9 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.0 | 0.9 | GO:0032587 | ruffle membrane(GO:0032587) |
0.1 | 0.8 | GO:0097038 | perinuclear endoplasmic reticulum(GO:0097038) |
0.0 | 0.6 | GO:0060170 | ciliary membrane(GO:0060170) |
0.0 | 0.5 | GO:0016580 | Sin3 complex(GO:0016580) |
0.0 | 0.5 | GO:0005956 | protein kinase CK2 complex(GO:0005956) |
0.0 | 0.5 | GO:0044666 | MLL3/4 complex(GO:0044666) |
0.1 | 0.4 | GO:0030915 | Smc5-Smc6 complex(GO:0030915) |
0.1 | 0.3 | GO:0031907 | peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.3 | GO:0045296 | cadherin binding(GO:0045296) |
0.0 | 2.2 | GO:0005125 | cytokine activity(GO:0005125) |
0.0 | 1.1 | GO:0005518 | collagen binding(GO:0005518) |
0.0 | 0.9 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
0.0 | 0.9 | GO:0030898 | actin-dependent ATPase activity(GO:0030898) |
0.1 | 0.8 | GO:0008327 | methyl-CpG binding(GO:0008327) |
0.0 | 0.8 | GO:0019869 | chloride channel inhibitor activity(GO:0019869) potassium channel inhibitor activity(GO:0019870) |
0.0 | 0.8 | GO:0015248 | sterol transporter activity(GO:0015248) |
0.0 | 0.8 | GO:0005227 | calcium activated cation channel activity(GO:0005227) |
0.1 | 0.6 | GO:0038036 | sphingosine-1-phosphate receptor activity(GO:0038036) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.0 | 0.7 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.0 | 0.6 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
0.0 | 0.4 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.0 | 0.4 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 0.1 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.6 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.0 | 0.6 | REACTOME TIE2 SIGNALING | Genes involved in Tie2 Signaling |
0.0 | 0.5 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
0.0 | 0.4 | REACTOME AKT PHOSPHORYLATES TARGETS IN THE CYTOSOL | Genes involved in AKT phosphorylates targets in the cytosol |
0.0 | 0.3 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.0 | 0.3 | REACTOME INSULIN SYNTHESIS AND PROCESSING | Genes involved in Insulin Synthesis and Processing |
0.0 | 0.1 | REACTOME ACTIVATION OF IRF3 IRF7 MEDIATED BY TBK1 IKK EPSILON | Genes involved in Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon |