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PRJEB1986: zebrafish developmental stages transcriptome

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Results for znf148

Z-value: 0.73

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Transcription factors associated with znf148

Gene Symbol Gene ID Gene Info
znf148
ENSDARG00000055106 zinc finger protein 148

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
znf148dr11_v1_chr9_+_38624478_386245330.571.1e-02Click!

Activity profile of znf148 motif

Sorted Z-values of znf148 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr5_+_22974019 1.91 ENSDART00000147157
ENSDART00000020434
brwd3
bromodomain and WD repeat domain containing 3
chr3_-_1938588 1.82 ENSDART00000013001
ENSDART00000186405
zgc:152753
zgc:152753
chr17_-_4245311 1.43 ENSDART00000055379
gdf3
growth differentiation factor 3
chr11_-_7029897 1.32 ENSDART00000077406
ENSDART00000184582
ENSDART00000180369
cdh27
cadherin 27
chr16_+_5678071 1.11 ENSDART00000011166
ENSDART00000134198
ENSDART00000131575
zgc:158689
zgc:158689
chr7_-_6279138 1.03 ENSDART00000173299
si:ch211-220f21.2
si:ch211-220f21.2
chr7_-_1101071 0.93 ENSDART00000176053
dctn1a
dynactin 1a
chr14_+_18781082 0.83 ENSDART00000108793
si:ch211-111e20.1
si:ch211-111e20.1
chr10_+_38512270 0.82 ENSDART00000109752
serpinh1a
serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a
chr4_-_8093753 0.80 ENSDART00000133434
wnk1b
WNK lysine deficient protein kinase 1b
chr17_-_4245902 0.80 ENSDART00000151851
gdf3
growth differentiation factor 3
chr12_-_4532066 0.77 ENSDART00000092687
trpm4b.2
transient receptor potential cation channel, subfamily M, member 4b, transient receptor potential cation channel, subfamily M, member 4b, tandem duplicate 2
chr6_-_12275836 0.77 ENSDART00000189980
pkp4
plakophilin 4
chr1_+_52690448 0.75 ENSDART00000150326
osbp
oxysterol binding protein
chr11_+_41981959 0.74 ENSDART00000055707
her15.1
hairy and enhancer of split-related 15, tandem duplicate 1
chr15_-_5580093 0.69 ENSDART00000143726
wdr62
WD repeat domain 62
chr13_-_40302710 0.69 ENSDART00000144360
pyroxd2
pyridine nucleotide-disulphide oxidoreductase domain 2
chr4_-_77557279 0.69 ENSDART00000180113
AL935186.10

chr13_+_23214100 0.65 ENSDART00000163393
sorbs1
sorbin and SH3 domain containing 1
chr11_+_44579865 0.65 ENSDART00000173425
nid1b
nidogen 1b
chr6_-_141564 0.65 ENSDART00000151245
ENSDART00000063876
s1pr5b
sphingosine-1-phosphate receptor 5b
chr23_+_27778670 0.64 ENSDART00000053863
kmt2d
lysine (K)-specific methyltransferase 2D
chr20_+_38201644 0.61 ENSDART00000022694
ehd3
EH-domain containing 3
chr17_-_36818176 0.59 ENSDART00000061762
myo6b
myosin VIb
chr6_-_9581949 0.59 ENSDART00000144335
cyp27c1
cytochrome P450, family 27, subfamily C, polypeptide 1
chr5_+_6617401 0.58 ENSDART00000060532
zgc:110796
zgc:110796
chr6_-_21830405 0.57 ENSDART00000151803
ENSDART00000113497
setd5
SET domain containing 5
chr5_-_21030934 0.57 ENSDART00000133461
ENSDART00000098667
camk2b1
calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 1
chr5_+_483965 0.56 ENSDART00000150007
tek
TEK tyrosine kinase, endothelial
chr24_-_40667800 0.56 ENSDART00000169315
smyhc1
slow myosin heavy chain 1
chr11_+_6116503 0.56 ENSDART00000176170
nr2f6b
nuclear receptor subfamily 2, group F, member 6b
chr24_-_40668208 0.55 ENSDART00000171543
smyhc1
slow myosin heavy chain 1
chr11_+_2434262 0.52 ENSDART00000166445
csnk2a4
casein kinase 2, alpha 4 polypeptide
chr7_-_48391571 0.52 ENSDART00000180034
sin3ab
SIN3 transcription regulator family member Ab
chr3_-_31804481 0.48 ENSDART00000028270
gfap
glial fibrillary acidic protein
chr18_+_33725576 0.47 ENSDART00000146816
si:dkey-145c18.5
si:dkey-145c18.5
chr14_+_29945070 0.46 ENSDART00000185039
fam149a
family with sequence similarity 149 member A
chr6_+_50451337 0.46 ENSDART00000155051
mych
myelocytomatosis oncogene homolog
chr1_-_23595779 0.44 ENSDART00000134860
ENSDART00000138852
lcorl
ligand dependent nuclear receptor corepressor-like
chr14_+_7939398 0.44 ENSDART00000189773
cxxc5b
CXXC finger protein 5b
chr1_-_411331 0.43 ENSDART00000092524
rasa3
RAS p21 protein activator 3
chr22_-_607812 0.42 ENSDART00000145983
cdkn1a
cyclin-dependent kinase inhibitor 1A
chr15_-_2734560 0.41 ENSDART00000153853
ppp5c
protein phosphatase 5, catalytic subunit
chr20_-_1454131 0.40 ENSDART00000138059
ptprk
protein tyrosine phosphatase, receptor type, K
chr14_+_7939216 0.39 ENSDART00000171657
cxxc5b
CXXC finger protein 5b
chr21_-_11632403 0.39 ENSDART00000171708
ENSDART00000138619
ENSDART00000136308
ENSDART00000144770
cast
calpastatin
chr8_-_14209852 0.39 ENSDART00000005359
def6a
differentially expressed in FDCP 6a homolog (mouse)
chr6_+_4084739 0.39 ENSDART00000087661
sema5bb
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Bb
chr17_+_6667441 0.38 ENSDART00000123503
ENSDART00000180381
ENSDART00000156140
smc6
structural maintenance of chromosomes 6
chr20_+_305035 0.38 ENSDART00000104807
si:dkey-119m7.4
si:dkey-119m7.4
chr16_+_11029762 0.37 ENSDART00000091183
erfl3
Ets2 repressor factor like 3
chr6_+_41554794 0.36 ENSDART00000165424
srgap3
SLIT-ROBO Rho GTPase activating protein 3
chr13_+_42309688 0.35 ENSDART00000158367
ide
insulin-degrading enzyme
chr21_-_13856689 0.34 ENSDART00000102197
fam129ba
family with sequence similarity 129, member Ba
chr20_+_50052627 0.34 ENSDART00000188799
cpsf2
cleavage and polyadenylation specific factor 2
chr14_-_14604527 0.33 ENSDART00000190378
rab9b
RAB9B, member RAS oncogene family
chr11_-_27537593 0.32 ENSDART00000173444
ENSDART00000172895
ENSDART00000088177
ptpdc1a
protein tyrosine phosphatase domain containing 1a
chr5_+_4564233 0.31 ENSDART00000193435
CABZ01058647.1

chr20_+_733510 0.30 ENSDART00000135066
ENSDART00000015558
ENSDART00000152782
myo6a
myosin VIa
chr22_-_38360205 0.30 ENSDART00000162055
mark1
MAP/microtubule affinity-regulating kinase 1
chr13_-_35459928 0.29 ENSDART00000144109
slx4ip
SLX4 interacting protein
chr3_-_36419641 0.29 ENSDART00000173545
cog1
component of oligomeric golgi complex 1
chr15_-_29388012 0.29 ENSDART00000115032
serpinh1b
serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b
chr5_+_1933131 0.28 ENSDART00000061693
si:ch73-55i23.1
si:ch73-55i23.1
chr14_-_26177156 0.27 ENSDART00000014149
fat2
FAT atypical cadherin 2
chr8_-_22826996 0.26 ENSDART00000146563
magixa
MAGI family member, X-linked a
chr18_+_2228737 0.26 ENSDART00000165301
rab27a
RAB27A, member RAS oncogene family
chr23_-_351935 0.26 ENSDART00000140986
uhrf1bp1
UHRF1 binding protein 1
chr2_+_6181383 0.25 ENSDART00000153307
si:ch73-344o19.1
si:ch73-344o19.1
chr9_-_43213057 0.25 ENSDART00000059448
ENSDART00000133589
sestd1
SEC14 and spectrin domains 1
chr22_-_506522 0.24 ENSDART00000106645
ENSDART00000067637
dstyk
dual serine/threonine and tyrosine protein kinase
chr7_-_6356875 0.23 ENSDART00000173426
zgc:112234
zgc:112234
chr5_+_26212621 0.23 ENSDART00000134432
oclnb
occludin b
chr14_-_41556533 0.22 ENSDART00000074401
itga6l
integrin, alpha 6, like
chr9_-_43213229 0.22 ENSDART00000139775
sestd1
SEC14 and spectrin domains 1
chr4_-_72468562 0.21 ENSDART00000181890
CR788316.1

chr20_+_17739923 0.20 ENSDART00000024627
cdh2
cadherin 2, type 1, N-cadherin (neuronal)
chr9_-_6927587 0.20 ENSDART00000059092
tmem182a
transmembrane protein 182a
chr21_-_41838284 0.19 ENSDART00000141067
cct6a
chaperonin containing TCP1, subunit 6A (zeta 1)
chr5_+_41793001 0.17 ENSDART00000136439
ENSDART00000190477
ENSDART00000192289
bcl7a
BCL tumor suppressor 7A
chr6_+_28877306 0.15 ENSDART00000065137
ENSDART00000123189
ENSDART00000065135
ENSDART00000181512
ENSDART00000130799
tp63
tumor protein p63
chr10_+_1638876 0.14 ENSDART00000184484
ENSDART00000060946
ENSDART00000181251
sgsm1b
small G protein signaling modulator 1b
chr16_+_37876779 0.14 ENSDART00000140148
si:ch211-198c19.1
si:ch211-198c19.1
chr17_-_52521002 0.13 ENSDART00000114931
prox2
prospero homeobox 2
chr2_+_10147029 0.13 ENSDART00000139064
ENSDART00000053426
ENSDART00000153678
pfn2l
profilin 2 like
chr23_+_20518504 0.13 ENSDART00000114246
adnpb
activity-dependent neuroprotector homeobox b
chr17_-_29249258 0.12 ENSDART00000031458
traf3
TNF receptor-associated factor 3
chr2_-_12242695 0.12 ENSDART00000158175
gpr158b
G protein-coupled receptor 158b
chr20_+_52554352 0.11 ENSDART00000153217
ENSDART00000145230
eef1db
eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein)
chr6_-_8736766 0.10 ENSDART00000143956
cavin2b
caveolae associated protein 2b
chr14_-_15155384 0.10 ENSDART00000172666
uvssa
UV-stimulated scaffold protein A
chr18_-_16885362 0.10 ENSDART00000132778
swap70b
switching B cell complex subunit SWAP70b
chr22_+_30035719 0.09 ENSDART00000192238
AL845330.1

chr13_-_42579437 0.09 ENSDART00000135172
fam83ha
family with sequence similarity 83, member Ha
chr9_+_56449505 0.08 ENSDART00000187725
CABZ01079480.1

chr1_-_28885919 0.08 ENSDART00000152182
poglut1
protein O-glucosyltransferase 1
chr14_-_41556720 0.08 ENSDART00000149244
itga6l
integrin, alpha 6, like
chr15_+_3125136 0.08 ENSDART00000130968
rcbtb2
regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
chr2_-_12243213 0.08 ENSDART00000113081
gpr158b
G protein-coupled receptor 158b
chr4_-_11751037 0.08 ENSDART00000102301
podxl
podocalyxin-like
chr4_+_11464255 0.06 ENSDART00000008584
gdi2
GDP dissociation inhibitor 2
chr12_-_41619257 0.06 ENSDART00000162967
dpysl4
dihydropyrimidinase-like 4
chr20_-_48172556 0.05 ENSDART00000097888
CABZ01059099.1

chr2_+_50477779 0.05 ENSDART00000122716
CABZ01067973.1

chr25_-_20666328 0.05 ENSDART00000098076
csk
C-terminal Src kinase
chr7_+_13039426 0.05 ENSDART00000171777
syt7b
synaptotagmin VIIb
chr13_-_27767330 0.04 ENSDART00000131631
ENSDART00000112553
ENSDART00000189911
rims1a
regulating synaptic membrane exocytosis 1a
chr3_-_31924643 0.04 ENSDART00000122589
rnf113a
ring finger protein 113A
chr23_+_28648864 0.03 ENSDART00000189096
l1cama
L1 cell adhesion molecule, paralog a
chr8_-_26709959 0.03 ENSDART00000135215
tmem51a
transmembrane protein 51a
chr9_+_30274637 0.03 ENSDART00000079095
rpgra
retinitis pigmentosa GTPase regulator a
chr24_+_42132962 0.02 ENSDART00000187739
wwp1
WW domain containing E3 ubiquitin protein ligase 1
chr21_-_43474012 0.01 ENSDART00000065104
tmem185
transmembrane protein 185
chr2_-_6182098 0.01 ENSDART00000156167
si:ch73-182a11.2
si:ch73-182a11.2

Network of associatons between targets according to the STRING database.

First level regulatory network of znf148

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.2 GO:0038107 nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145)
0.3 0.8 GO:0002369 T cell cytokine production(GO:0002369)
0.2 1.1 GO:0031444 slow-twitch skeletal muscle fiber contraction(GO:0031444)
0.1 1.1 GO:2000251 positive regulation of actin cytoskeleton reorganization(GO:2000251)
0.1 0.9 GO:0008105 asymmetric protein localization(GO:0008105) apical protein localization(GO:0045176)
0.1 0.6 GO:0003422 growth plate cartilage morphogenesis(GO:0003422) chondrocyte intercalation involved in growth plate cartilage morphogenesis(GO:0003428)
0.1 0.2 GO:0090248 hindbrain structural organization(GO:0021577) dorsal fin morphogenesis(GO:0035142) cell motility involved in somitogenic axis elongation(GO:0090247) cell migration involved in somitogenic axis elongation(GO:0090248)
0.1 0.4 GO:0097341 inhibition of cysteine-type endopeptidase activity(GO:0097340) zymogen inhibition(GO:0097341)
0.0 0.8 GO:1902307 positive regulation of sodium ion transport(GO:0010765) positive regulation of sodium ion transmembrane transport(GO:1902307) regulation of potassium ion import(GO:1903286) positive regulation of potassium ion import(GO:1903288) positive regulation of sodium ion transmembrane transporter activity(GO:2000651)
0.0 0.3 GO:0006398 mRNA 3'-end processing by stem-loop binding and cleavage(GO:0006398)
0.0 0.4 GO:0043363 nucleate erythrocyte differentiation(GO:0043363)
0.0 0.7 GO:0032467 positive regulation of cytokinesis(GO:0032467)
0.0 0.6 GO:0051897 positive regulation of protein kinase B signaling(GO:0051897)
0.0 0.3 GO:0050435 beta-amyloid metabolic process(GO:0050435)
0.0 0.2 GO:0060036 notochord cell vacuolation(GO:0060036)
0.0 1.1 GO:0030199 collagen fibril organization(GO:0030199)
0.0 0.3 GO:0035479 angioblast cell migration from lateral mesoderm to midline(GO:0035479)
0.0 0.1 GO:0033631 cell-cell adhesion mediated by integrin(GO:0033631) regulation of cell-cell adhesion mediated by integrin(GO:0033632)
0.0 0.6 GO:0030537 larval locomotory behavior(GO:0008345) larval behavior(GO:0030537)
0.0 0.4 GO:0035914 skeletal muscle cell differentiation(GO:0035914)
0.0 0.2 GO:0048730 epidermis morphogenesis(GO:0048730)
0.0 0.1 GO:0008063 Toll signaling pathway(GO:0008063)
0.0 0.6 GO:0050974 detection of mechanical stimulus involved in sensory perception(GO:0050974)
0.0 1.9 GO:0008360 regulation of cell shape(GO:0008360)
0.0 0.1 GO:0045687 positive regulation of gliogenesis(GO:0014015) positive regulation of glial cell differentiation(GO:0045687) positive regulation of oligodendrocyte differentiation(GO:0048714)
0.0 0.1 GO:0006283 transcription-coupled nucleotide-excision repair(GO:0006283)
0.0 0.6 GO:0032456 endocytic recycling(GO:0032456)
0.0 0.3 GO:0046475 glycerophospholipid catabolic process(GO:0046475)
0.0 0.3 GO:0032482 Rab protein signal transduction(GO:0032482)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0031907 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.1 0.4 GO:0030915 Smc5-Smc6 complex(GO:0030915)
0.1 0.8 GO:0097038 perinuclear endoplasmic reticulum(GO:0097038)
0.0 0.5 GO:0016580 Sin3 complex(GO:0016580)
0.0 0.3 GO:0030670 phagocytic vesicle membrane(GO:0030670)
0.0 0.5 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.0 0.9 GO:0035371 microtubule plus-end(GO:0035371)
0.0 1.5 GO:0016342 catenin complex(GO:0016342)
0.0 0.6 GO:0060170 ciliary membrane(GO:0060170)
0.0 0.5 GO:0044666 MLL3/4 complex(GO:0044666)
0.0 0.3 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.3 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.0 0.9 GO:0032587 ruffle membrane(GO:0032587)
0.0 0.2 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.0 0.1 GO:0005853 eukaryotic translation elongation factor 1 complex(GO:0005853)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0038036 sphingosine-1-phosphate receptor activity(GO:0038036)
0.1 0.6 GO:0001972 retinoic acid binding(GO:0001972)
0.1 0.8 GO:0008327 methyl-CpG binding(GO:0008327)
0.1 0.4 GO:0010859 calcium-dependent cysteine-type endopeptidase inhibitor activity(GO:0010859)
0.1 0.4 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861)
0.0 0.8 GO:0019869 chloride channel inhibitor activity(GO:0019869) potassium channel inhibitor activity(GO:0019870)
0.0 0.4 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding(GO:0001217)
0.0 0.4 GO:0008026 ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) purine NTP-dependent helicase activity(GO:0070035)
0.0 1.1 GO:0005518 collagen binding(GO:0005518)
0.0 0.8 GO:0015248 sterol transporter activity(GO:0015248)
0.0 0.6 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.0 0.9 GO:0051010 microtubule plus-end binding(GO:0051010)
0.0 0.3 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.0 0.8 GO:0005227 calcium activated cation channel activity(GO:0005227)
0.0 2.3 GO:0045296 cadherin binding(GO:0045296)
0.0 0.1 GO:0019215 intermediate filament binding(GO:0019215)
0.0 0.1 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.0 0.3 GO:0031730 CCR1 chemokine receptor binding(GO:0031726) CCR4 chemokine receptor binding(GO:0031729) CCR5 chemokine receptor binding(GO:0031730)
0.0 0.9 GO:0030898 actin-dependent ATPase activity(GO:0030898)
0.0 2.2 GO:0005125 cytokine activity(GO:0005125)
0.0 0.6 GO:0004683 calmodulin-dependent protein kinase activity(GO:0004683)
0.0 0.1 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
0.0 0.6 PID ANGIOPOIETIN RECEPTOR PATHWAY Angiopoietin receptor Tie2-mediated signaling
0.0 0.4 PID NFAT TFPATHWAY Calcineurin-regulated NFAT-dependent transcription in lymphocytes
0.0 0.7 SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES Genes related to the insulin receptor pathway
0.0 2.2 NABA SECRETED FACTORS Genes encoding secreted soluble factors
0.0 0.1 ST ERK1 ERK2 MAPK PATHWAY ERK1/ERK2 MAPK Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 REACTOME SMOOTH MUSCLE CONTRACTION Genes involved in Smooth Muscle Contraction
0.0 0.4 REACTOME AKT PHOSPHORYLATES TARGETS IN THE CYTOSOL Genes involved in AKT phosphorylates targets in the cytosol
0.0 0.8 REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS Genes involved in Sphingolipid de novo biosynthesis
0.0 0.6 REACTOME TIE2 SIGNALING Genes involved in Tie2 Signaling
0.0 0.3 REACTOME PROCESSING OF INTRONLESS PRE MRNAS Genes involved in Processing of Intronless Pre-mRNAs
0.0 0.5 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4
0.0 0.3 REACTOME INSULIN SYNTHESIS AND PROCESSING Genes involved in Insulin Synthesis and Processing
0.0 0.1 REACTOME ACTIVATION OF IRF3 IRF7 MEDIATED BY TBK1 IKK EPSILON Genes involved in Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon