PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
znf384l | dr11_v1_chr19_-_6988837_6988866 | -0.84 | 5.4e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr22_+_14093306 Show fit | 6.18 |
ENSDART00000080329
ENSDART00000115383 |
hatching enzyme 1, tandem duplicate 1 |
|
chr5_-_20195350 Show fit | 4.19 |
ENSDART00000139675
|
D-amino-acid oxidase, tandem duplicate 1 |
|
chr21_-_20711739 Show fit | 4.18 |
ENSDART00000190918
|
|
|
chr8_+_8936912 Show fit | 4.01 |
ENSDART00000135958
|
si:dkey-83k24.5 |
|
chr17_-_12758171 Show fit | 3.25 |
ENSDART00000131564
|
breast cancer metastasis-suppressor 1-like a |
|
chr22_-_15593824 Show fit | 3.03 |
ENSDART00000123125
|
tropomyosin 4a |
|
chr17_-_14817458 Show fit | 2.98 |
ENSDART00000155907
ENSDART00000156476 |
nidogen 2a (osteonidogen) |
|
chr23_+_38251864 Show fit | 2.93 |
ENSDART00000183498
ENSDART00000129593 |
zinc finger protein 217 |
|
chr17_+_16429826 Show fit | 2.88 |
ENSDART00000136078
|
EF-hand calcium binding domain 11 |
|
chr17_-_14836320 Show fit | 2.85 |
ENSDART00000157051
|
nidogen 2a (osteonidogen) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 13.3 | GO:0046777 | protein autophosphorylation(GO:0046777) |
0.0 | 8.0 | GO:0008380 | RNA splicing(GO:0008380) |
0.1 | 5.8 | GO:0061386 | closure of optic fissure(GO:0061386) |
1.0 | 4.2 | GO:0009080 | alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) D-alanine family amino acid metabolic process(GO:0046144) D-alanine metabolic process(GO:0046436) D-alanine catabolic process(GO:0055130) |
0.8 | 4.0 | GO:0046607 | positive regulation of centrosome cycle(GO:0046607) |
0.3 | 4.0 | GO:0090481 | pyrimidine nucleotide-sugar transport(GO:0015781) pyrimidine nucleotide-sugar transmembrane transport(GO:0090481) |
0.1 | 3.8 | GO:0034968 | histone lysine methylation(GO:0034968) |
0.1 | 3.3 | GO:0006406 | mRNA export from nucleus(GO:0006406) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427) |
0.1 | 3.3 | GO:0000387 | spliceosomal snRNP assembly(GO:0000387) |
0.1 | 3.2 | GO:0010862 | positive regulation of pathway-restricted SMAD protein phosphorylation(GO:0010862) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.7 | GO:0005814 | centriole(GO:0005814) |
0.1 | 6.6 | GO:0005604 | basement membrane(GO:0005604) |
0.0 | 5.6 | GO:0000139 | Golgi membrane(GO:0000139) |
0.1 | 5.1 | GO:0016592 | mediator complex(GO:0016592) |
0.2 | 4.3 | GO:0046540 | U4/U6 x U5 tri-snRNP complex(GO:0046540) |
0.0 | 4.1 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.1 | 4.0 | GO:0005643 | nuclear pore(GO:0005643) |
0.0 | 3.7 | GO:0005819 | spindle(GO:0005819) |
0.0 | 3.7 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 3.6 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 32.1 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.0 | 11.2 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
0.1 | 5.3 | GO:0004869 | cysteine-type endopeptidase inhibitor activity(GO:0004869) |
0.1 | 4.7 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.5 | 4.4 | GO:0046974 | histone methyltransferase activity (H3-K9 specific)(GO:0046974) |
1.0 | 4.2 | GO:0003884 | D-amino-acid oxidase activity(GO:0003884) |
0.2 | 4.0 | GO:0015165 | pyrimidine nucleotide-sugar transmembrane transporter activity(GO:0015165) |
0.0 | 4.0 | GO:0003743 | translation initiation factor activity(GO:0003743) |
0.0 | 3.8 | GO:0005125 | cytokine activity(GO:0005125) |
0.1 | 3.4 | GO:0042826 | histone deacetylase binding(GO:0042826) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.9 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 3.0 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.0 | 3.0 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 2.8 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 2.5 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 2.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.1 | 2.1 | PID ERBB1 RECEPTOR PROXIMAL PATHWAY | EGF receptor (ErbB1) signaling pathway |
0.0 | 2.1 | ST T CELL SIGNAL TRANSDUCTION | T Cell Signal Transduction |
0.1 | 1.9 | PID ALK2 PATHWAY | ALK2 signaling events |
0.1 | 1.9 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.2 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 5.7 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.1 | 5.2 | REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY | Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery |
0.1 | 5.2 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.2 | 4.6 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.0 | 3.9 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
0.1 | 3.5 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.0 | 3.1 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 3.0 | REACTOME RNA POL III TRANSCRIPTION INITIATION FROM TYPE 3 PROMOTER | Genes involved in RNA Polymerase III Transcription Initiation From Type 3 Promoter |
0.1 | 2.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |