PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
znf711 | dr11_v1_chr14_-_12020653_12020653 | 0.53 | 2.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_+_23768898 Show fit | 11.52 |
ENSDART00000110682
|
homeobox B1a |
|
chr7_-_48667056 Show fit | 5.79 |
ENSDART00000006378
|
cyclin-dependent kinase inhibitor 1Ca |
|
chr13_+_45967179 Show fit | 5.15 |
ENSDART00000074499
|
oligodendrocyte transcription factor 4 |
|
chr24_+_17005647 Show fit | 4.94 |
ENSDART00000149149
|
zinc finger protein, X-linked |
|
chr23_-_9859989 Show fit | 4.44 |
ENSDART00000005015
|
protein kinase C binding protein 1, like |
|
chr23_-_3758637 Show fit | 4.35 |
ENSDART00000131536
ENSDART00000139408 ENSDART00000137826 |
high mobility group AT-hook 1a |
|
chr22_-_10541372 Show fit | 4.31 |
ENSDART00000179708
|
si:dkey-42i9.4 |
|
chr1_-_33557915 Show fit | 4.24 |
ENSDART00000075632
|
cAMP responsive element binding protein 1a |
|
chr3_+_23743139 Show fit | 4.03 |
ENSDART00000187409
|
homeobox B3a |
|
chr16_+_25163443 Show fit | 3.97 |
ENSDART00000105514
|
zinc finger protein 576, tandem duplicate 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 34.4 | GO:0006355 | regulation of transcription, DNA-templated(GO:0006355) |
1.6 | 11.5 | GO:0021661 | rhombomere 4 development(GO:0021570) rhombomere 4 morphogenesis(GO:0021661) |
0.2 | 10.0 | GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling(GO:0043123) |
0.1 | 8.9 | GO:0043484 | regulation of RNA splicing(GO:0043484) |
0.1 | 8.1 | GO:0034504 | protein localization to nucleus(GO:0034504) |
0.1 | 7.6 | GO:0045930 | negative regulation of mitotic cell cycle(GO:0045930) |
0.0 | 7.0 | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter(GO:0000122) |
0.3 | 6.9 | GO:0008156 | negative regulation of DNA replication(GO:0008156) |
0.4 | 6.2 | GO:0071156 | regulation of cell cycle arrest(GO:0071156) |
0.8 | 5.8 | GO:0045736 | negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 141.8 | GO:0005634 | nucleus(GO:0005634) |
0.1 | 8.9 | GO:0031461 | cullin-RING ubiquitin ligase complex(GO:0031461) |
0.0 | 8.4 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 8.0 | GO:0000785 | chromatin(GO:0000785) |
0.1 | 7.7 | GO:0005643 | nuclear pore(GO:0005643) |
0.2 | 7.4 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.3 | 6.0 | GO:0005852 | eukaryotic translation initiation factor 3 complex(GO:0005852) |
0.2 | 4.0 | GO:0042555 | MCM complex(GO:0042555) |
0.4 | 3.9 | GO:0045252 | oxoglutarate dehydrogenase complex(GO:0045252) |
0.0 | 3.8 | GO:1990904 | ribonucleoprotein complex(GO:1990904) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 66.9 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
0.0 | 22.6 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.0 | 11.3 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.0 | 7.5 | GO:0003723 | RNA binding(GO:0003723) |
0.0 | 7.2 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.3 | 6.7 | GO:0004709 | MAP kinase kinase kinase activity(GO:0004709) |
0.3 | 6.5 | GO:0008139 | nuclear localization sequence binding(GO:0008139) |
0.1 | 5.9 | GO:0042826 | histone deacetylase binding(GO:0042826) |
0.7 | 5.8 | GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) |
0.1 | 5.7 | GO:0019843 | rRNA binding(GO:0019843) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 6.7 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.2 | 6.7 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.2 | 6.3 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 5.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.3 | 5.0 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.2 | 4.3 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.2 | 3.7 | PID BETA CATENIN DEG PATHWAY | Degradation of beta catenin |
0.1 | 3.6 | PID RAS PATHWAY | Regulation of Ras family activation |
0.1 | 3.4 | PID MYC PATHWAY | C-MYC pathway |
0.1 | 3.2 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 14.7 | REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S | Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
0.7 | 9.7 | REACTOME IRAK2 MEDIATED ACTIVATION OF TAK1 COMPLEX UPON TLR7 8 OR 9 STIMULATION | Genes involved in IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation |
0.4 | 6.5 | REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX | Genes involved in Association of licensing factors with the pre-replicative complex |
0.2 | 5.8 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.1 | 5.4 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
0.3 | 5.2 | REACTOME DESTABILIZATION OF MRNA BY KSRP | Genes involved in Destabilization of mRNA by KSRP |
0.2 | 5.0 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.1 | 4.5 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.4 | 3.9 | REACTOME NOTCH HLH TRANSCRIPTION PATHWAY | Genes involved in Notch-HLH transcription pathway |
0.1 | 3.8 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |